Difference between revisions of "TSS:Hg 104993.1"
From referenceTSS
| Line 4: | Line 4: | ||
|UBCH5= | |UBCH5= | ||
|UBCH5A= | |UBCH5A= | ||
| − | |all_trans=AK291901:0 BC005980:0 BC015997:0 ENST00000615793.1:-20 NM_001204880:-20 | + | |all_trans=ENST00000373910.9:0 NM_003338:0 AK291901:0 BC005980:0 BC015997:0 ENST00000615793.1:-20 NM_001204880:-20 LP895195:-24 AJ272367:42 AF257220:42 X78140:173 AB590170:186 DQ896385:186 DQ893111:186 KJ892341:187 BT007041:188 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=58335014 | |end=58335014 | ||
|end_of_center_position=58335007 | |end_of_center_position=58335007 | ||
|entrez_id=7321 | |entrez_id=7321 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=E2(17)KB1 | + | |gene_alias=E2(17)KB1{{!}}SFT{{!}}UBC4/5{{!}}UBCH5{{!}}UBCH5A |
|gene_description=ubiquitin conjugating enzyme E2 D1 | |gene_description=ubiquitin conjugating enzyme E2 D1 | ||
|gene_id=7321 | |gene_id=7321 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:12474 | |hgnc_mgi_id=HGNC:12474 | ||
|nearest_ensembl=ENSG00000072401 | |nearest_ensembl=ENSG00000072401 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003338 |
|nearest_refseq=NM_003338 | |nearest_refseq=NM_003338 | ||
|nearest_unigene=Hs.129683 | |nearest_unigene=Hs.129683 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=58334998 | |start=58334998 | ||
|start_of_center_position=58335006 | |start_of_center_position=58335006 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AK291901 BC005980 BC015997 | + | |transcript_name=ENST00000373910.9 NM_003338 AK291901 BC005980 BC015997 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104993.1 | |tss_id=hg_104993.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A024QZJ2 P51668 |
}} | }} | ||
Revision as of 18:03, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58335006 |
|---|---|
| End of the center position in the TSS region: | 58335007 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000373910.9 NM_003338 AK291901 BC005980 BC015997 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000373910.9:0 NM_003338:0 AK291901:0 BC005980:0 BC015997:0 ENST00000615793.1:-20 NM_001204880:-20 LP895195:-24 AJ272367:42 AF257220:42 X78140:173 AB590170:186 DQ896385:186 DQ893111:186 KJ892341:187 BT007041:188 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_003338 |
| Entrez ID: | 7321 |
| Nearest Unigene: | Hs.129683 |
| Nearest Refseq: | NM_003338 |
| Nearest Ensembl: | ENSG00000072401 |
| Gene Name: | ubiquitin conjugating enzyme E2 D1 |
| Gene Alias: | E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A |
| Gene Description: | ubiquitin conjugating enzyme E2 D1 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
