Difference between revisions of "TSS:Hg 105054.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000330194.2:25 NM_173554 | + | |all_trans=ENST00000648843.3:0 NM_001366908:0 NM_001366909:0 NM_001366907:0 NM_001366905:0 NM_001366906:0 ENST00000330194.2:25 NM_173554:25 BC041932:25 ENST00000389639.3:61 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss=- | + | |distance_to_tss=-1 |
|end=61662936 | |end=61662936 | ||
|end_of_center_position=61662929 | |end_of_center_position=61662929 | ||
|entrez_id=219621 | |entrez_id=219621 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias= | + | |gene_alias=C10orf107 |
| − | |gene_description= | + | |gene_description=ciliary associated calcium binding coiled-coil 1 |
|gene_id=219621 | |gene_id=219621 | ||
| − | |gene_name= | + | |gene_name=ciliary associated calcium binding coiled-coil 1 |
|gene_source=HGNC:28678 | |gene_source=HGNC:28678 | ||
| − | |gene_symbol= | + | |gene_symbol=CABCOCO1 |
|gene_synonyms=Em:AC022398.2 MGC44593 bA63A2.1 | |gene_synonyms=Em:AC022398.2 MGC44593 bA63A2.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28678 | |hgnc_mgi_id=HGNC:28678 | ||
|nearest_ensembl=ENSG00000183346 | |nearest_ensembl=ENSG00000183346 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001366905 |
|nearest_refseq=NM_173554 | |nearest_refseq=NM_173554 | ||
|nearest_unigene=Hs.673160 | |nearest_unigene=Hs.673160 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=61662920 | |start=61662920 | ||
|start_of_center_position=61662928 | |start_of_center_position=61662928 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000648843.3 NM_001366908 NM_001366909 NM_001366907 NM_001366905 NM_001366906 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105054.1 | |tss_id=hg_105054.1 | ||
Revision as of 18:05, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 61662928 |
|---|---|
| End of the center position in the TSS region: | 61662929 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000648843.3 NM_001366908 NM_001366909 NM_001366907 NM_001366905 NM_001366906 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000648843.3:0 NM_001366908:0 NM_001366909:0 NM_001366907:0 NM_001366905:0 NM_001366906:0 ENST00000330194.2:25 NM_173554:25 BC041932:25 ENST00000389639.3:61 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001366905 |
| Entrez ID: | 219621 |
| Nearest Unigene: | Hs.673160 |
| Nearest Refseq: | NM_173554 |
| Nearest Ensembl: | ENSG00000183346 |
| Gene Name: | ciliary associated calcium binding coiled-coil 1 |
| Gene Alias: | C10orf107 |
| Gene Description: | ciliary associated calcium binding coiled-coil 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
