Difference between revisions of "TSS:Hg 105059.1"
From referenceTSS
| Line 2: | Line 2: | ||
|MRF-2= | |MRF-2= | ||
|MRF2= | |MRF2= | ||
| − | |all_trans=AK296921:0 BC107800:0 BC056680:0 AB527389:4 BC156570:4 BC152736:4 | + | |all_trans=ENST00000644638.1:0 ENST00000681100.1:0 ENST00000279873.12:0 NM_032199:0 AK296921:0 BC107800:0 BC056680:0 AB527389:4 BC156570:4 BC152736:4 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-7 |
|end=61901706 | |end=61901706 | ||
|end_of_center_position=61901693 | |end_of_center_position=61901693 | ||
|entrez_id=84159 | |entrez_id=84159 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=DESRT | + | |gene_alias=DESRT{{!}}MRF-2{{!}}MRF2 |
|gene_description=AT-rich interaction domain 5B | |gene_description=AT-rich interaction domain 5B | ||
|gene_id=84159 | |gene_id=84159 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_032199 | |nearest_refseq=NM_032199 | ||
|nearest_unigene=Hs.535297 | |nearest_unigene=Hs.535297 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=61901678 | |start=61901678 | ||
|start_of_center_position=61901692 | |start_of_center_position=61901692 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AK296921 BC107800 BC056680 | + | |transcript_name=ENST00000644638.1 ENST00000681100.1 ENST00000279873.12 NM_032199 AK296921 BC107800 BC056680 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105059.1 | |tss_id=hg_105059.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A2R8Y5F2 Q14865 |
}} | }} | ||
Revision as of 18:05, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 61901692 |
|---|---|
| End of the center position in the TSS region: | 61901693 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000644638.1 ENST00000681100.1 ENST00000279873.12 NM_032199 AK296921 BC107800 BC056680 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000644638.1:0 ENST00000681100.1:0 ENST00000279873.12:0 NM_032199:0 AK296921:0 BC107800:0 BC056680:0 AB527389:4 BC156570:4 BC152736:4 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_032199 |
| Entrez ID: | 84159 |
| Nearest Unigene: | Hs.535297 |
| Nearest Refseq: | NM_032199 |
| Nearest Ensembl: | ENSG00000150347 |
| Gene Name: | AT-rich interaction domain 5B |
| Gene Alias: | DESRT|MRF-2|MRF2 |
| Gene Description: | AT-rich interaction domain 5B |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
