Difference between revisions of "TSS:Hg 105082.1"
From referenceTSS
| Line 2: | Line 2: | ||
|MRF-2= | |MRF-2= | ||
|MRF2= | |MRF2= | ||
| + | |all_trans=ENST00000647323.1:-54 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=-54 |
| − | |distance_to_tss=- | + | |distance_to_tss=-2631 |
|end=62046737 | |end=62046737 | ||
|end_of_center_position=62046727 | |end_of_center_position=62046727 | ||
|entrez_id=84159 | |entrez_id=84159 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=DESRT | + | |gene_alias=DESRT{{!}}MRF-2{{!}}MRF2 |
|gene_description=AT-rich interaction domain 5B | |gene_description=AT-rich interaction domain 5B | ||
| − | |gene_name=ARID5B | + | |gene_id=84159 |
| + | |gene_name=AT-rich interaction domain 5B | ||
| + | |gene_source=HGNC:17362 | ||
| + | |gene_symbol=ARID5B | ||
| + | |gene_synonyms=FLJ21150 MRF2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17362 | ||
|nearest_ensembl=ENSG00000150347 | |nearest_ensembl=ENSG00000150347 | ||
|nearest_promoter_id=NM_001244638 | |nearest_promoter_id=NM_001244638 | ||
|nearest_refseq=NM_032199 | |nearest_refseq=NM_032199 | ||
|nearest_unigene=Hs.535297 | |nearest_unigene=Hs.535297 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=62046715 | |start=62046715 | ||
|start_of_center_position=62046726 | |start_of_center_position=62046726 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000647323.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105082.1 | |tss_id=hg_105082.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:05, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 62046726 |
|---|---|
| End of the center position in the TSS region: | 62046727 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000647323.1 |
|---|---|
| Distance: | -54 |
| Num_trans: | 1 |
| All_trans: | ENST00000647323.1:-54 |
TATA-Box annotation
| Distance to TSS: | -2631 |
|---|---|
| Nearest PromoterID: | NM_001244638 |
| Entrez ID: | 84159 |
| Nearest Unigene: | Hs.535297 |
| Nearest Refseq: | NM_032199 |
| Nearest Ensembl: | ENSG00000150347 |
| Gene Name: | AT-rich interaction domain 5B |
| Gene Alias: | DESRT|MRF-2|MRF2 |
| Gene Description: | AT-rich interaction domain 5B |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
