Difference between revisions of "TSS:Hg 105090.1"
From referenceTSS
| Line 2: | Line 2: | ||
|MRF-2= | |MRF-2= | ||
|MRF2= | |MRF2= | ||
| − | |all_trans=BC066345:-89 ENST00000309334.5 | + | |all_trans=NM_001244638:19 BC066345:-89 ENST00000309334.5:-121 BC015120:-121 AK024803:128 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=19 |
| − | |distance_to_tss= | + | |distance_to_tss=-22 |
|end=62049338 | |end=62049338 | ||
|end_of_center_position=62049335 | |end_of_center_position=62049335 | ||
|entrez_id=84159 | |entrez_id=84159 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=DESRT | + | |gene_alias=DESRT{{!}}MRF-2{{!}}MRF2 |
|gene_description=AT-rich interaction domain 5B | |gene_description=AT-rich interaction domain 5B | ||
|gene_id=84159 | |gene_id=84159 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_032199 | |nearest_refseq=NM_032199 | ||
|nearest_unigene=Hs.535297 | |nearest_unigene=Hs.535297 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=62049331 | |start=62049331 | ||
|start_of_center_position=62049334 | |start_of_center_position=62049334 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001244638 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105090.1 | |tss_id=hg_105090.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q14865 |
}} | }} | ||
Revision as of 18:06, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 62049334 |
|---|---|
| End of the center position in the TSS region: | 62049335 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001244638 |
|---|---|
| Distance: | 19 |
| Num_trans: | 5 |
| All_trans: | NM_001244638:19 BC066345:-89 ENST00000309334.5:-121 BC015120:-121 AK024803:128 |
TATA-Box annotation
| Distance to TSS: | -22 |
|---|---|
| Nearest PromoterID: | NM_001244638 |
| Entrez ID: | 84159 |
| Nearest Unigene: | Hs.535297 |
| Nearest Refseq: | NM_032199 |
| Nearest Ensembl: | ENSG00000150347 |
| Gene Name: | AT-rich interaction domain 5B |
| Gene Alias: | DESRT|MRF-2|MRF2 |
| Gene Description: | AT-rich interaction domain 5B |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
