Difference between revisions of "TSS:Hg 105116.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=-12544 |entrez_id=219790 |gc_percent=0.522388 |gene_alias=PLEKHK1|bA531F24.1 |gene_description=rhotekin 2 |gene_name=RTKN2 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |bA531F24.1= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance_to_tss=- | + | |distance=NA |
| + | |distance_to_tss=-12563 | ||
| + | |end=62281411 | ||
| + | |end_of_center_position=62281408 | ||
|entrez_id=219790 | |entrez_id=219790 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=PLEKHK1 | + | |gene_alias=PLEKHK1{{!}}bA531F24.1 |
|gene_description=rhotekin 2 | |gene_description=rhotekin 2 | ||
|gene_name=RTKN2 | |gene_name=RTKN2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000182010 | |nearest_ensembl=ENSG00000182010 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_145307 |
|nearest_refseq=NM_145307 | |nearest_refseq=NM_145307 | ||
|nearest_unigene=Hs.58559 | |nearest_unigene=Hs.58559 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=62281403 | ||
| + | |start_of_center_position=62281407 | ||
| + | |strand=+ | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_105116.1 | |tss_id=hg_105116.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:06, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 62281407 |
|---|---|
| End of the center position in the TSS region: | 62281408 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -12563 |
|---|---|
| Nearest PromoterID: | NM_145307 |
| Entrez ID: | 219790 |
| Nearest Unigene: | Hs.58559 |
| Nearest Refseq: | NM_145307 |
| Nearest Ensembl: | ENSG00000182010 |
| Gene Name: | RTKN2 |
| Gene Alias: | PLEKHK1|bA531F24.1 |
| Gene Description: | rhotekin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
