Difference between revisions of "TSS:Hg 105169.1"
From referenceTSS
| Line 3: | Line 3: | ||
|COPR2= | |COPR2= | ||
|NRBF-2= | |NRBF-2= | ||
| − | |all_trans=ENST00000435510.6 | + | |all_trans=ENST00000435510.6:-3 NM_001282405:-3 AK054957:30 AL136656:33 AF267866:47 AK301656:65 ENST00000277746.11:68 NM_030759:68 AK225257:76 AK225256:80 AY267839:99 AY267840:99 BC011707:113 AB590768:211 EU832288:211 EU832373:211 HQ447342:211 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 12: | Line 12: | ||
|entrez_id=29982 | |entrez_id=29982 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=COPR | + | |gene_alias=COPR{{!}}COPR1{{!}}COPR2{{!}}NRBF-2 |
|gene_description=nuclear receptor binding factor 2 | |gene_description=nuclear receptor binding factor 2 | ||
|gene_id=29982 | |gene_id=29982 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:19692 | |hgnc_mgi_id=HGNC:19692 | ||
|nearest_ensembl=ENSG00000148572 | |nearest_ensembl=ENSG00000148572 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282405 |
|nearest_refseq=NM_030759 | |nearest_refseq=NM_030759 | ||
|nearest_unigene=Hs.449628 | |nearest_unigene=Hs.449628 | ||
| − | |num_trans= | + | |num_trans=17 |
|species=human | |species=human | ||
|start=63133249 | |start=63133249 | ||
|start_of_center_position=63133254 | |start_of_center_position=63133254 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000435510.6 | + | |transcript_name=ENST00000435510.6 NM_001282405 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105169.1 | |tss_id=hg_105169.1 | ||
Revision as of 18:07, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 63133254 |
|---|---|
| End of the center position in the TSS region: | 63133255 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000435510.6 NM_001282405 |
|---|---|
| Distance: | -3 |
| Num_trans: | 17 |
| All_trans: | ENST00000435510.6:-3 NM_001282405:-3 AK054957:30 AL136656:33 AF267866:47 AK301656:65 ENST00000277746.11:68 NM_030759:68 AK225257:76 AK225256:80 AY267839:99 AY267840:99 BC011707:113 AB590768:211 EU832288:211 EU832373:211 HQ447342:211 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_001282405 |
| Entrez ID: | 29982 |
| Nearest Unigene: | Hs.449628 |
| Nearest Refseq: | NM_030759 |
| Nearest Ensembl: | ENSG00000148572 |
| Gene Name: | nuclear receptor binding factor 2 |
| Gene Alias: | COPR|COPR1|COPR2|NRBF-2 |
| Gene Description: | nuclear receptor binding factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
