Difference between revisions of "TSS:Hg 105225.1"
From referenceTSS
| Line 3: | Line 3: | ||
|MYOP= | |MYOP= | ||
|RCM4= | |RCM4= | ||
| − | |all_trans=BC142609:0 AL832002:-49 AL834247:-49 BX647637:-58 ENST00000373675.3:-63 | + | |all_trans=BC142609:0 AL832002:-49 AL834247:-49 BX647637:-58 ENST00000373675.3:-63 AK027343:-63 ENST00000358913.10:-71 NR_045663:-71 NM_032578:-71 BC144333:94 BC144334:94 ENST00000613327.4:-126 NM_001256268:-126 AF328296:-322 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=80 |
|end=68109577 | |end=68109577 | ||
|end_of_center_position=68109568 | |end_of_center_position=68109568 | ||
|entrez_id=84665 | |entrez_id=84665 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
| − | |gene_alias=CMD1DD | + | |gene_alias=CMD1DD{{!}}CMH22{{!}}MYOP{{!}}NEM11{{!}}RCM4 |
|gene_description=myopalladin | |gene_description=myopalladin | ||
|gene_id=84665 | |gene_id=84665 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:23246 | |hgnc_mgi_id=HGNC:23246 | ||
|nearest_ensembl=ENSG00000138347 | |nearest_ensembl=ENSG00000138347 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_045663 |
|nearest_refseq=NM_032578 | |nearest_refseq=NM_032578 | ||
|nearest_unigene=Hs.55205 | |nearest_unigene=Hs.55205 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=68109558 | |start=68109558 | ||
Revision as of 18:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68109567 |
|---|---|
| End of the center position in the TSS region: | 68109568 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC142609 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | BC142609:0 AL832002:-49 AL834247:-49 BX647637:-58 ENST00000373675.3:-63 AK027343:-63 ENST00000358913.10:-71 NR_045663:-71 NM_032578:-71 BC144333:94 BC144334:94 ENST00000613327.4:-126 NM_001256268:-126 AF328296:-322 |
TATA-Box annotation
| Distance to TSS: | 80 |
|---|---|
| Nearest PromoterID: | NR_045663 |
| Entrez ID: | 84665 |
| Nearest Unigene: | Hs.55205 |
| Nearest Refseq: | NM_032578 |
| Nearest Ensembl: | ENSG00000138347 |
| Gene Name: | myopalladin |
| Gene Alias: | CMD1DD|CMH22|MYOP|NEM11|RCM4 |
| Gene Description: | myopalladin |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
