Difference between revisions of "TSS:Hg 10524.1"
From referenceTSS
| Line 4: | Line 4: | ||
|CTRCT6= | |CTRCT6= | ||
|ECK= | |ECK= | ||
| − | |all_trans=AK296788:0 | + | |all_trans=ENST00000358432.8:0 NM_001329090:0 NM_004431:0 AK296788:0 LP882418:-6 LY623324:-6 MB416867:-6 ENST00000461614.1:8 BC037166:10 M59371:17 DQ895231:127 EU176326:127 EU826606:128 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-1 |
|end=16156081 | |end=16156081 | ||
|end_of_center_position=16156071 | |end_of_center_position=16156071 | ||
|entrez_id=1969 | |entrez_id=1969 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=ARCC2 | + | |gene_alias=ARCC2{{!}}CTPA{{!}}CTPP1{{!}}CTRCT6{{!}}ECK |
|gene_description=EPH receptor A2 | |gene_description=EPH receptor A2 | ||
|gene_id=1969 | |gene_id=1969 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_004431 | |nearest_refseq=NM_004431 | ||
|nearest_unigene=Hs.171596 | |nearest_unigene=Hs.171596 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=human | |species=human | ||
|start=16156059 | |start=16156059 | ||
|start_of_center_position=16156070 | |start_of_center_position=16156070 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-85(GCCCCTTTAAAG,-,0.00),-84(CCCCTTTAAAGA,-,0.00),-83(CCCTTTAAAGAC,+,0.00),-83(CCCTTTAAAGAC,-,0.00) |
| − | |transcript_name=AK296788 | + | |transcript_name=ENST00000358432.8 NM_001329090 NM_004431 AK296788 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10524.1 | |tss_id=hg_10524.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DL04 | + | |uniprot_id=A0A024QZA8 B4DL04 P29317 |
}} | }} | ||
Revision as of 18:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 16156070 |
|---|---|
| End of the center position in the TSS region: | 16156071 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000358432.8 NM_001329090 NM_004431 AK296788 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | ENST00000358432.8:0 NM_001329090:0 NM_004431:0 AK296788:0 LP882418:-6 LY623324:-6 MB416867:-6 ENST00000461614.1:8 BC037166:10 M59371:17 DQ895231:127 EU176326:127 EU826606:128 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001329090 |
| Entrez ID: | 1969 |
| Nearest Unigene: | Hs.171596 |
| Nearest Refseq: | NM_004431 |
| Nearest Ensembl: | ENSG00000142627 |
| Gene Name: | EPH receptor A2 |
| Gene Alias: | ARCC2|CTPA|CTPP1|CTRCT6|ECK |
| Gene Description: | EPH receptor A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -85(GCCCCTTTAAAG,-,0.00),-84(CCCCTTTAAAGA,-,0.00),-83(CCCTTTAAAGAC,+,0.00),-83(CCCTTTAAAGAC,-,0.00) |
