Difference between revisions of "TSS:Hg 105244.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=18728 |entrez_id=8034 |gc_percent=0.457711 |gene_alias=D10S105E|GDA|GDC|HGT.1|ML7|hML7 |gene_description=solute carrier family...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GDA= | ||
| + | |GDC= | ||
| + | |HGT.1= | ||
| + | |ML7= | ||
| + | |all_trans=D28413:0 ENST00000414397.1:40 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=0 | ||
|distance_to_tss=18728 | |distance_to_tss=18728 | ||
| + | |end=68499492 | ||
| + | |end_of_center_position=68499490 | ||
|entrez_id=8034 | |entrez_id=8034 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=D10S105E | + | |gene_alias=D10S105E{{!}}GDA{{!}}GDC{{!}}HGT.1{{!}}ML7{{!}}hML7 |
|gene_description=solute carrier family 25 member 16 | |gene_description=solute carrier family 25 member 16 | ||
|gene_name=SLC25A16 | |gene_name=SLC25A16 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hML7= | ||
|nearest_ensembl=ENSG00000122912 | |nearest_ensembl=ENSG00000122912 | ||
|nearest_promoter_id=NM_001324315 | |nearest_promoter_id=NM_001324315 | ||
|nearest_refseq=NM_152707 | |nearest_refseq=NM_152707 | ||
|nearest_unigene=Hs.180408 | |nearest_unigene=Hs.180408 | ||
| − | |tata_box= | + | |num_trans=2 |
| + | |species=human | ||
| + | |start=68499487 | ||
| + | |start_of_center_position=68499489 | ||
| + | |strand=+ | ||
| + | |tata_box=-20(CCTTAAAAATAC,+,0.00) | ||
| + | |transcript_name=D28413 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105244.1 | |tss_id=hg_105244.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68499489 |
|---|---|
| End of the center position in the TSS region: | 68499490 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | D28413 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | D28413:0 ENST00000414397.1:40 |
TATA-Box annotation
| Distance to TSS: | 18728 |
|---|---|
| Nearest PromoterID: | NM_001324315 |
| Entrez ID: | 8034 |
| Nearest Unigene: | Hs.180408 |
| Nearest Refseq: | NM_152707 |
| Nearest Ensembl: | ENSG00000122912 |
| Gene Name: | SLC25A16 |
| Gene Alias: | D10S105E|GDA|GDC|HGT.1|ML7|hML7 |
| Gene Description: | solute carrier family 25 member 16 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -20(CCTTAAAAATAC,+,0.00) |
