Difference between revisions of "TSS:Hg 105246.1"
From referenceTSS
| Line 3: | Line 3: | ||
|MLL-TET1= | |MLL-TET1= | ||
|TET1-MLL= | |TET1-MLL= | ||
| − | |all_trans= | + | |all_trans=ENST00000373644.5:29 NM_030625:29 AF430147:348 |
|bA119F7.1= | |bA119F7.1= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=29 |
| − | |distance_to_tss=- | + | |distance_to_tss=-41 |
|end=68560308 | |end=68560308 | ||
|end_of_center_position=68560297 | |end_of_center_position=68560297 | ||
|entrez_id=80312 | |entrez_id=80312 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=CXXC6 | + | |gene_alias=CXXC6{{!}}LCX{{!}}bA119F7.1 |
|gene_description=tet methylcytosine dioxygenase 1 | |gene_description=tet methylcytosine dioxygenase 1 | ||
|gene_id=80312 | |gene_id=80312 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_030625 | |nearest_refseq=NM_030625 | ||
|nearest_unigene=Hs.258855 | |nearest_unigene=Hs.258855 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=68560284 | |start=68560284 | ||
|start_of_center_position=68560296 | |start_of_center_position=68560296 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_030625 | + | |transcript_name=ENST00000373644.5 NM_030625 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105246.1 | |tss_id=hg_105246.1 | ||
Revision as of 18:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68560296 |
|---|---|
| End of the center position in the TSS region: | 68560297 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000373644.5 NM_030625 |
|---|---|
| Distance: | 29 |
| Num_trans: | 3 |
| All_trans: | ENST00000373644.5:29 NM_030625:29 AF430147:348 |
TATA-Box annotation
| Distance to TSS: | -41 |
|---|---|
| Nearest PromoterID: | NM_030625 |
| Entrez ID: | 80312 |
| Nearest Unigene: | Hs.258855 |
| Nearest Refseq: | NM_030625 |
| Nearest Ensembl: | ENSG00000138336 |
| Gene Name: | tet methylcytosine dioxygenase 1 |
| Gene Alias: | CXXC6|LCX|bA119F7.1 |
| Gene Description: | tet methylcytosine dioxygenase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
