Difference between revisions of "TSS:Hg 105325.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PEP8A= | |PEP8A= | ||
|VPS26= | |VPS26= | ||
| − | |all_trans=ENST00000497564.5:0 ENST00000490696.5:0 | + | |all_trans=ENST00000263559.11:0 ENST00000497564.5:0 ENST00000490696.5:0 NM_004896:0 NM_001318944:0 NM_001318945:0 NM_001318946:0 BC022505:0 BX649092:0 AK315496:0 AK297142:0 AF054179:0 AF175266:0 AK309021:0 AK022992:0 BX647725:0 ENST00000467852.1:5 AK290536:6 ENST00000489656.5:-12 NM_001035260:-15 ENST00000395098.5:-16 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=26 |
|end=69124241 | |end=69124241 | ||
|end_of_center_position=69124205 | |end_of_center_position=69124205 | ||
|entrez_id=9559 | |entrez_id=9559 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=HB58 | + | |gene_alias=HB58{{!}}Hbeta58{{!}}PEP8A{{!}}VPS26 |
| − | |gene_description= | + | |gene_description=VPS26, retromer complex component A |
|gene_id=9559 | |gene_id=9559 | ||
| − | |gene_name=VPS26 retromer complex component A | + | |gene_name=VPS26, retromer complex component A |
|gene_source=HGNC:12711 | |gene_source=HGNC:12711 | ||
|gene_symbol=VPS26A | |gene_symbol=VPS26A | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:12711 | |hgnc_mgi_id=HGNC:12711 | ||
|nearest_ensembl=ENSG00000122958 | |nearest_ensembl=ENSG00000122958 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_004896 |
|nearest_refseq=NM_004896 | |nearest_refseq=NM_004896 | ||
|nearest_unigene=Hs.499925 | |nearest_unigene=Hs.499925 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=69124167 | |start=69124167 | ||
|start_of_center_position=69124204 | |start_of_center_position=69124204 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000497564.5 ENST00000490696.5 | + | |transcript_name=ENST00000263559.11 ENST00000497564.5 ENST00000490696.5 NM_004896 NM_001318944 NM_001318945 NM_001318946 BC022505 BX649092 AK315496 AK297142 AF054179 AF175266 AK309021 AK022992 BX647725 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105325.1 | |tss_id=hg_105325.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B4DLT1 | + | |uniprot_id=B4DLT1 O75436 |
}} | }} | ||
Revision as of 18:11, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 69124204 |
|---|---|
| End of the center position in the TSS region: | 69124205 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000263559.11 ENST00000497564.5 ENST00000490696.5 NM_004896 NM_001318944 NM_001318945 NM_001318946 BC022505 BX649092 AK315496 AK297142 AF054179 AF175266 AK309021 AK022992 BX647725 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000263559.11:0 ENST00000497564.5:0 ENST00000490696.5:0 NM_004896:0 NM_001318944:0 NM_001318945:0 NM_001318946:0 BC022505:0 BX649092:0 AK315496:0 AK297142:0 AF054179:0 AF175266:0 AK309021:0 AK022992:0 BX647725:0 ENST00000467852.1:5 AK290536:6 ENST00000489656.5:-12 NM_001035260:-15 ENST00000395098.5:-16 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_004896 |
| Entrez ID: | 9559 |
| Nearest Unigene: | Hs.499925 |
| Nearest Refseq: | NM_004896 |
| Nearest Ensembl: | ENSG00000122958 |
| Gene Name: | VPS26, retromer complex component A |
| Gene Alias: | HB58|Hbeta58|PEP8A|VPS26 |
| Gene Description: | VPS26, retromer complex component A |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
