Difference between revisions of "TSS:Hg 105327.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000359655.9:381 NM_003171:381 NM_001323588:381 NR_136626:381 NM_001323585:381 NM_001323586:381 NM_001323587:381 NM_001323584:381 NR_136627:381 NM_001301683:381 BC036112:384 LF208770:386 MA444347:386 ENST00000471069.5:397 AK299670:397 AK290416:397 ENST00000483572.5:428 ENST00000422378.1:435 CU690300:439 DQ894183:439 KJ892230:439 AF042169:439 DQ891004:439 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=381 |
| − | |distance_to_tss=- | + | |distance_to_tss=-387 |
|end=69179853 | |end=69179853 | ||
|end_of_center_position=69179848 | |end_of_center_position=69179848 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:11471 | |hgnc_mgi_id=HGNC:11471 | ||
|nearest_ensembl=ENSG00000156502 | |nearest_ensembl=ENSG00000156502 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323584 |
|nearest_refseq=NM_003171 | |nearest_refseq=NM_003171 | ||
|nearest_unigene=Hs.106469 | |nearest_unigene=Hs.106469 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=69179841 | |start=69179841 | ||
|start_of_center_position=69179847 | |start_of_center_position=69179847 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_001301683 | + | |transcript_name=ENST00000359655.9 NM_003171 NM_001323588 NR_136626 NM_001323585 NM_001323586 NM_001323587 NM_001323584 NR_136627 NM_001301683 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105327.1 | |tss_id=hg_105327.1 | ||
Revision as of 18:11, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 69179847 |
|---|---|
| End of the center position in the TSS region: | 69179848 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000359655.9 NM_003171 NM_001323588 NR_136626 NM_001323585 NM_001323586 NM_001323587 NM_001323584 NR_136627 NM_001301683 |
|---|---|
| Distance: | 381 |
| Num_trans: | 23 |
| All_trans: | ENST00000359655.9:381 NM_003171:381 NM_001323588:381 NR_136626:381 NM_001323585:381 NM_001323586:381 NM_001323587:381 NM_001323584:381 NR_136627:381 NM_001301683:381 BC036112:384 LF208770:386 MA444347:386 ENST00000471069.5:397 AK299670:397 AK290416:397 ENST00000483572.5:428 ENST00000422378.1:435 CU690300:439 DQ894183:439 KJ892230:439 AF042169:439 DQ891004:439 |
TATA-Box annotation
| Distance to TSS: | -387 |
|---|---|
| Nearest PromoterID: | NM_001323584 |
| Entrez ID: | 6832 |
| Nearest Unigene: | Hs.106469 |
| Nearest Refseq: | NM_003171 |
| Nearest Ensembl: | ENSG00000156502 |
| Gene Name: | Suv3 like RNA helicase |
| Gene Alias: | SUV3 |
| Gene Description: | Suv3 like RNA helicase |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
