Difference between revisions of "TSS:Hg 105330.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000359655. | + | |all_trans=ENST00000359655.9:0 ENST00000471069.5:0 ENST00000483572.5:0 NM_003171:0 NM_001323588:0 NR_136626:0 NM_001323585:0 NM_001323586:0 NM_001323587:0 NM_001323584:0 NR_136627:0 NM_001301683:0 BC036112:0 LF208770:0 MA444347:0 AK299670:0 AK290416:0 ENST00000422378.1:4 CU690300:8 DQ894183:8 KJ892230:8 AF042169:8 DQ891004:8 LF322625:130 MA558202:130 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=22 |
|end=69180284 | |end=69180284 | ||
|end_of_center_position=69180256 | |end_of_center_position=69180256 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:11471 | |hgnc_mgi_id=HGNC:11471 | ||
|nearest_ensembl=ENSG00000156502 | |nearest_ensembl=ENSG00000156502 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323586 |
|nearest_refseq=NM_003171 | |nearest_refseq=NM_003171 | ||
|nearest_unigene=Hs.106469 | |nearest_unigene=Hs.106469 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=69180227 | |start=69180227 | ||
|start_of_center_position=69180255 | |start_of_center_position=69180255 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000359655. | + | |transcript_name=ENST00000359655.9 ENST00000471069.5 ENST00000483572.5 NM_003171 NM_001323588 NR_136626 NM_001323585 NM_001323586 NM_001323587 NM_001323584 NR_136627 NM_001301683 BC036112 LF208770 MA444347 AK299670 AK290416 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105330.1 | |tss_id=hg_105330.1 | ||
Revision as of 18:11, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 69180255 |
|---|---|
| End of the center position in the TSS region: | 69180256 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000359655.9 ENST00000471069.5 ENST00000483572.5 NM_003171 NM_001323588 NR_136626 NM_001323585 NM_001323586 NM_001323587 NM_001323584 NR_136627 NM_001301683 BC036112 LF208770 MA444347 AK299670 AK290416 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000359655.9:0 ENST00000471069.5:0 ENST00000483572.5:0 NM_003171:0 NM_001323588:0 NR_136626:0 NM_001323585:0 NM_001323586:0 NM_001323587:0 NM_001323584:0 NR_136627:0 NM_001301683:0 BC036112:0 LF208770:0 MA444347:0 AK299670:0 AK290416:0 ENST00000422378.1:4 CU690300:8 DQ894183:8 KJ892230:8 AF042169:8 DQ891004:8 LF322625:130 MA558202:130 |
TATA-Box annotation
| Distance to TSS: | 22 |
|---|---|
| Nearest PromoterID: | NM_001323586 |
| Entrez ID: | 6832 |
| Nearest Unigene: | Hs.106469 |
| Nearest Refseq: | NM_003171 |
| Nearest Ensembl: | ENSG00000156502 |
| Gene Name: | Suv3 like RNA helicase |
| Gene Alias: | SUV3 |
| Gene Description: | Suv3 like RNA helicase |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
