Difference between revisions of "TSS:Hg 105331.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=CU690300:-15 DQ894183:-15 | + | |all_trans=CU690300:-15 DQ894183:-15 KJ892230:-15 AF042169:-15 DQ891004:-15 ENST00000422378.1:-19 ENST00000483572.5:-26 ENST00000471069.5:-57 AK299670:-57 AK290416:-57 LF208770:-68 MA444347:-68 BC036112:-70 ENST00000359655.9:-73 NM_003171:-73 NM_001323588:-73 NR_136626:-73 NM_001323585:-73 NM_001323586:-73 NM_001323587:-73 NM_001323584:-73 NR_136627:-73 NM_001301683:-73 LF322625:97 MA558202:97 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=-15 | |distance=-15 | ||
| − | |distance_to_tss= | + | |distance_to_tss=78 |
|end=69180317 | |end=69180317 | ||
|end_of_center_position=69180312 | |end_of_center_position=69180312 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:11471 | |hgnc_mgi_id=HGNC:11471 | ||
|nearest_ensembl=ENSG00000156502 | |nearest_ensembl=ENSG00000156502 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323586 |
|nearest_refseq=NM_003171 | |nearest_refseq=NM_003171 | ||
|nearest_unigene=Hs.106469 | |nearest_unigene=Hs.106469 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=69180306 | |start=69180306 | ||
|start_of_center_position=69180311 | |start_of_center_position=69180311 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=CU690300 DQ894183 AF042169 DQ891004 | + | |transcript_name=CU690300 DQ894183 KJ892230 AF042169 DQ891004 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105331.1 | |tss_id=hg_105331.1 | ||
Revision as of 18:11, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 69180311 |
|---|---|
| End of the center position in the TSS region: | 69180312 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU690300 DQ894183 KJ892230 AF042169 DQ891004 |
|---|---|
| Distance: | -15 |
| Num_trans: | 25 |
| All_trans: | CU690300:-15 DQ894183:-15 KJ892230:-15 AF042169:-15 DQ891004:-15 ENST00000422378.1:-19 ENST00000483572.5:-26 ENST00000471069.5:-57 AK299670:-57 AK290416:-57 LF208770:-68 MA444347:-68 BC036112:-70 ENST00000359655.9:-73 NM_003171:-73 NM_001323588:-73 NR_136626:-73 NM_001323585:-73 NM_001323586:-73 NM_001323587:-73 NM_001323584:-73 NR_136627:-73 NM_001301683:-73 LF322625:97 MA558202:97 |
TATA-Box annotation
| Distance to TSS: | 78 |
|---|---|
| Nearest PromoterID: | NM_001323586 |
| Entrez ID: | 6832 |
| Nearest Unigene: | Hs.106469 |
| Nearest Refseq: | NM_003171 |
| Nearest Ensembl: | ENSG00000156502 |
| Gene Name: | Suv3 like RNA helicase |
| Gene Alias: | SUV3 |
| Gene Description: | Suv3 like RNA helicase |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
