Difference between revisions of "TSS:Hg 105356.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Math4B= | |Math4B= | ||
|NGN-3= | |NGN-3= | ||
| + | |all_trans=LF322599:-16 MA558176:-16 LF322598:49 MA558175:49 | ||
|bHLHa7= | |bHLHa7= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=-16 |
| − | |distance_to_tss= | + | |distance_to_tss=463 |
|end=69572963 | |end=69572963 | ||
|end_of_center_position=69572960 | |end_of_center_position=69572960 | ||
|entrez_id=50674 | |entrez_id=50674 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=Atoh5 | + | |gene_alias=Atoh5{{!}}Math4B{{!}}NGN-3{{!}}bHLHa7{{!}}ngn3 |
|gene_description=neurogenin 3 | |gene_description=neurogenin 3 | ||
|gene_name=NEUROG3 | |gene_name=NEUROG3 | ||
| Line 20: | Line 21: | ||
|nearest_unigene=Hs.532682 | |nearest_unigene=Hs.532682 | ||
|ngn3= | |ngn3= | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=69572955 | |start=69572955 | ||
|start_of_center_position=69572959 | |start_of_center_position=69572959 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF322599 MA558176 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105356.1 | |tss_id=hg_105356.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:12, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 69572959 |
|---|---|
| End of the center position in the TSS region: | 69572960 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF322599 MA558176 |
|---|---|
| Distance: | -16 |
| Num_trans: | 4 |
| All_trans: | LF322599:-16 MA558176:-16 LF322598:49 MA558175:49 |
TATA-Box annotation
| Distance to TSS: | 463 |
|---|---|
| Nearest PromoterID: | NM_020999 |
| Entrez ID: | 50674 |
| Nearest Unigene: | Hs.532682 |
| Nearest Refseq: | NM_020999 |
| Nearest Ensembl: | ENSG00000122859 |
| Gene Name: | NEUROG3 |
| Gene Alias: | Atoh5|Math4B|NGN-3|bHLHa7|ngn3 |
| Gene Description: | neurogenin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
