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Difference between revisions of "TSS:Hg 105362.1"

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{{TSSDetail
 
{{TSSDetail
 
|COLXIIIA1=
 
|COLXIIIA1=
−
|all_trans=ENST00000479733.5:0 ENST00000398978.7:0 ENST00000354547.7:0 ENST00000357811.7:0 uc057tui.1:0 uc057tuj.1:0 uc057tuk.1:0 uc057tul.1:0 BC139913:0 AJ293624:0 NM_080805:-6 NM_080800:-6 NM_080802:-6 NM_080801:-6 NM_001130103:-6 NM_080798:-6 ENST00000520267.5:171 ENST00000398969.7:171 uc057tum.1:171 uc057tun.1:171 BC136385:171 ENST00000517713.5:477 ENST00000522165.5:477 ENST00000520133.5:477 uc057tuo.1:477 uc057tup.1:477 uc057tuq.1:477
+
|all_trans=ENST00000645393.2:0 ENST00000398978.8:0 ENST00000673830.1:0 ENST00000479733.5:0 ENST00000354547.7:0 NM_080802:0 NM_001368895:0 NM_001368896:0 NM_001320951:0 NM_001368882:0 NM_080805:0 NM_080800:0 NM_080801:0 NM_080798:0 NM_001368883:0 NM_001368885:0 NM_001368886:0 NM_001368898:0 NM_001368897:0 NM_001130103:0 NM_001368884:0 BC139913:0 AJ293624:0 ENST00000357811.8:-14 ENST00000674121.1:102 ENST00000673842.1:124 ENST00000520267.5:171 ENST00000398969.7:171 BC136385:171 ENST00000517713.5:477 ENST00000522165.5:477 ENST00000520133.5:477
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.08
 
|cpg_percent=0.08
 
|distance=0
 
|distance=0
−
|distance_to_tss=32
+
|distance_to_tss=14
 
|end=69801947
 
|end=69801947
 
|end_of_center_position=69801921
 
|end_of_center_position=69801921
 
|entrez_id=1305
 
|entrez_id=1305
 
|gc_percent=0.666667
 
|gc_percent=0.666667
−
|gene_alias=CMS19
+
|gene_alias=CMS19{{!}}COLXIIIA1
 
|gene_description=collagen type XIII alpha 1 chain
 
|gene_description=collagen type XIII alpha 1 chain
 
|gene_id=1305
 
|gene_id=1305
−
|gene_name=collagen type XIII alpha 1
+
|gene_name=collagen type XIII alpha 1 chain
 
|gene_source=HGNC:2190
 
|gene_source=HGNC:2190
 
|gene_symbol=COL13A1
 
|gene_symbol=COL13A1
Line 20: Line 20:
 
|hgnc_mgi_id=HGNC:2190
 
|hgnc_mgi_id=HGNC:2190
 
|nearest_ensembl=ENSG00000197467
 
|nearest_ensembl=ENSG00000197467
−
|nearest_promoter_id=NM_080805
+
|nearest_promoter_id=NM_080801
 
|nearest_refseq=NM_005203
 
|nearest_refseq=NM_005203
 
|nearest_unigene=Hs.695934
 
|nearest_unigene=Hs.695934
−
|num_trans=27
+
|num_trans=32
 
|species=human
 
|species=human
 
|start=69801893
 
|start=69801893
 
|start_of_center_position=69801920
 
|start_of_center_position=69801920
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000479733.5 ENST00000398978.7 ENST00000354547.7 ENST00000357811.7 uc057tui.1 uc057tuj.1 uc057tuk.1 uc057tul.1 BC139913 AJ293624
+
|transcript_name=ENST00000645393.2 ENST00000398978.8 ENST00000673830.1 ENST00000479733.5 ENST00000354547.7 NM_080802 NM_001368895 NM_001368896 NM_001320951 NM_001368882 NM_080805 NM_080800 NM_080801 NM_080798 NM_001368883 NM_001368885 NM_001368886 NM_001368898 NM_001368897 NM_001130103 NM_001368884 BC139913 AJ293624
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_105362.1
 
|tss_id=hg_105362.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=E7EX21 Q5TAT6
+
|uniprot_id=A0A2R8YGI3 E7EX21 Q5TAT6
 
}}
 
}}

Revision as of 18:12, 15 June 2021

Basic information about the TSS

TSS ID:hg_105362.1
Species:human
Chr:chr10
TSS Classification:yes
Start:69801893
End:69801947
Strand:+
TSS Score:1
Start of the center position in the TSS region:69801920
End of the center position in the TSS region:69801921



Gene and protein annotation

Transcript_name:ENST00000645393.2 ENST00000398978.8 ENST00000673830.1 ENST00000479733.5 ENST00000354547.7 NM_080802 NM_001368895 NM_001368896 NM_001320951 NM_001368882 NM_080805 NM_080800 NM_080801 NM_080798 NM_001368883 NM_001368885 NM_001368886 NM_001368898 NM_001368897 NM_001130103 NM_001368884 BC139913 AJ293624
Distance:0
GeneID:1305
HGNC/MGI_ID:HGNC:2190
UniProt_ID:A0A2R8YGI3 E7EX21 Q5TAT6
Gene_name:collagen type XIII alpha 1 chain
Gene_symbol:COL13A1
Gene_synonyms:
Gene_source:HGNC:2190



Transcript annotation

Transcript_name:ENST00000645393.2 ENST00000398978.8 ENST00000673830.1 ENST00000479733.5 ENST00000354547.7 NM_080802 NM_001368895 NM_001368896 NM_001320951 NM_001368882 NM_080805 NM_080800 NM_080801 NM_080798 NM_001368883 NM_001368885 NM_001368886 NM_001368898 NM_001368897 NM_001130103 NM_001368884 BC139913 AJ293624
Distance:0
Num_trans:32
All_trans:ENST00000645393.2:0 ENST00000398978.8:0 ENST00000673830.1:0 ENST00000479733.5:0 ENST00000354547.7:0 NM_080802:0 NM_001368895:0 NM_001368896:0 NM_001320951:0 NM_001368882:0 NM_080805:0 NM_080800:0 NM_080801:0 NM_080798:0 NM_001368883:0 NM_001368885:0 NM_001368886:0 NM_001368898:0 NM_001368897:0 NM_001130103:0 NM_001368884:0 BC139913:0 AJ293624:0 ENST00000357811.8:-14 ENST00000674121.1:102 ENST00000673842.1:124 ENST00000520267.5:171 ENST00000398969.7:171 BC136385:171 ENST00000517713.5:477 ENST00000522165.5:477 ENST00000520133.5:477



TATA-Box annotation

Distance to TSS:14
Nearest PromoterID:NM_080801
Entrez ID:1305
Nearest Unigene:Hs.695934
Nearest Refseq:NM_005203
Nearest Ensembl:ENSG00000197467
Gene Name:collagen type XIII alpha 1 chain
Gene Alias:CMS19|COLXIIIA1
Gene Description:collagen type XIII alpha 1 chain
Gene Type:protein-coding
CpG%:0.08
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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