Difference between revisions of "TSS:Hg 105366.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|COLXIIIA1= | |COLXIIIA1= | ||
| − | |all_trans=M59217:-34 | + | |all_trans=ENST00000673802.1:8 ENST00000673641.1:8 M59217:-34 ENST00000673957.1:35 ENST00000673628.1:-53 ENST00000673914.1:-79 ENST00000674040.1:-79 ENST00000674008.1:-125 ENST00000517713.5:-162 ENST00000522165.5:-162 ENST00000520133.5:-162 ENST00000520267.5:-468 ENST00000398969.7:-468 BC136385:-468 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance= | + | |distance=8 |
| − | |distance_to_tss= | + | |distance_to_tss=687 |
|end=69802600 | |end=69802600 | ||
|end_of_center_position=69802593 | |end_of_center_position=69802593 | ||
|entrez_id=1305 | |entrez_id=1305 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=CMS19 | + | |gene_alias=CMS19{{!}}COLXIIIA1 |
|gene_description=collagen type XIII alpha 1 chain | |gene_description=collagen type XIII alpha 1 chain | ||
|gene_id=1305 | |gene_id=1305 | ||
| − | |gene_name=collagen type XIII alpha 1 | + | |gene_name=collagen type XIII alpha 1 chain |
|gene_source=HGNC:2190 | |gene_source=HGNC:2190 | ||
|gene_symbol=COL13A1 | |gene_symbol=COL13A1 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:2190 | |hgnc_mgi_id=HGNC:2190 | ||
|nearest_ensembl=ENSG00000197467 | |nearest_ensembl=ENSG00000197467 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_080801 |
|nearest_refseq=NM_005203 | |nearest_refseq=NM_005203 | ||
|nearest_unigene=Hs.695934 | |nearest_unigene=Hs.695934 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=69802585 | |start=69802585 | ||
|start_of_center_position=69802592 | |start_of_center_position=69802592 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000673802.1 ENST00000673641.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105366.1 | |tss_id=hg_105366.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A669KB55 A0A669KB79 |
}} | }} | ||
Revision as of 18:12, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 69802592 |
|---|---|
| End of the center position in the TSS region: | 69802593 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000673802.1 ENST00000673641.1 |
|---|---|
| Distance: | 8 |
| Num_trans: | 14 |
| All_trans: | ENST00000673802.1:8 ENST00000673641.1:8 M59217:-34 ENST00000673957.1:35 ENST00000673628.1:-53 ENST00000673914.1:-79 ENST00000674040.1:-79 ENST00000674008.1:-125 ENST00000517713.5:-162 ENST00000522165.5:-162 ENST00000520133.5:-162 ENST00000520267.5:-468 ENST00000398969.7:-468 BC136385:-468 |
TATA-Box annotation
| Distance to TSS: | 687 |
|---|---|
| Nearest PromoterID: | NM_080801 |
| Entrez ID: | 1305 |
| Nearest Unigene: | Hs.695934 |
| Nearest Refseq: | NM_005203 |
| Nearest Ensembl: | ENSG00000197467 |
| Gene Name: | collagen type XIII alpha 1 chain |
| Gene Alias: | CMS19|COLXIIIA1 |
| Gene Description: | collagen type XIII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
