Difference between revisions of "TSS:Hg 105373.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000676699.1:0 ENST00000676683.1:0 ENST00000677255.1:-38 ENST00000677659.1:184 ENST00000676609.1:214 ENST00000676923.1:249 BC016172:253 ENST00000679349.1:254 ENST00000373255.9:254 NM_018649:254 AK022776:254 AK131057:258 AF151534:269 AF336304:277 AK022475:285 ENST00000678178.1:288 ENST00000676608.1:288 ENST00000455786.1:288 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss=- | + | |distance_to_tss=-259 |
|end=70052592 | |end=70052592 | ||
|end_of_center_position=70052587 | |end_of_center_position=70052587 | ||
| Line 12: | Line 12: | ||
|gene_description=H2A histone family member Y2 | |gene_description=H2A histone family member Y2 | ||
|gene_id=55506 | |gene_id=55506 | ||
| − | |gene_name= | + | |gene_name=macroH2A.2 histone |
|gene_source=HGNC:14453 | |gene_source=HGNC:14453 | ||
| − | |gene_symbol= | + | |gene_symbol=MACROH2A2 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:14453 | |hgnc_mgi_id=HGNC:14453 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_018649 | |nearest_refseq=NM_018649 | ||
|nearest_unigene=Hs.499953 | |nearest_unigene=Hs.499953 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=70052581 | |start=70052581 | ||
|start_of_center_position=70052586 | |start_of_center_position=70052586 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=84(CCATTAATACTC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000676699.1 ENST00000676683.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105373.1 | |tss_id=hg_105373.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:12, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 70052586 |
|---|---|
| End of the center position in the TSS region: | 70052587 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000676699.1 ENST00000676683.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000676699.1:0 ENST00000676683.1:0 ENST00000677255.1:-38 ENST00000677659.1:184 ENST00000676609.1:214 ENST00000676923.1:249 BC016172:253 ENST00000679349.1:254 ENST00000373255.9:254 NM_018649:254 AK022776:254 AK131057:258 AF151534:269 AF336304:277 AK022475:285 ENST00000678178.1:288 ENST00000676608.1:288 ENST00000455786.1:288 |
TATA-Box annotation
| Distance to TSS: | -259 |
|---|---|
| Nearest PromoterID: | NM_018649 |
| Entrez ID: | 55506 |
| Nearest Unigene: | Hs.499953 |
| Nearest Refseq: | NM_018649 |
| Nearest Ensembl: | ENSG00000099284 |
| Gene Name: | macroH2A.2 histone |
| Gene Alias: | macroH2A2 |
| Gene Description: | H2A histone family member Y2 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 84(CCATTAATACTC,+,0.00) |
