Difference between revisions of "TSS:Hg 105380.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SARA1= | |SARA1= | ||
|Sara= | |Sara= | ||
| − | |all_trans=ENST00000428512.1:14 | + | |all_trans=ENST00000428512.1:14 LF211464:-18 MA447041:-18 LF379981:327 MA615558:327 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=14 | |distance=14 | ||
| − | |distance_to_tss= | + | |distance_to_tss=6863 |
|end=70163671 | |end=70163671 | ||
|end_of_center_position=70163651 | |end_of_center_position=70163651 | ||
|entrez_id=56681 | |entrez_id=56681 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=SAR1 | + | |gene_alias=SAR1{{!}}SARA1{{!}}Sara{{!}}masra2 |
|gene_description=secretion associated Ras related GTPase 1A | |gene_description=secretion associated Ras related GTPase 1A | ||
|gene_id= | |gene_id= | ||
| Line 22: | Line 22: | ||
|masra2= | |masra2= | ||
|nearest_ensembl=ENSG00000079332 | |nearest_ensembl=ENSG00000079332 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001142648 |
|nearest_refseq=NM_020150 | |nearest_refseq=NM_020150 | ||
|nearest_unigene=Hs.499960 | |nearest_unigene=Hs.499960 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=70163630 | |start=70163630 | ||
Revision as of 18:12, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70163650 |
|---|---|
| End of the center position in the TSS region: | 70163651 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000428512.1 |
|---|---|
| Distance: | 14 |
| Num_trans: | 5 |
| All_trans: | ENST00000428512.1:14 LF211464:-18 MA447041:-18 LF379981:327 MA615558:327 |
TATA-Box annotation
| Distance to TSS: | 6863 |
|---|---|
| Nearest PromoterID: | NM_001142648 |
| Entrez ID: | 56681 |
| Nearest Unigene: | Hs.499960 |
| Nearest Refseq: | NM_020150 |
| Nearest Ensembl: | ENSG00000079332 |
| Gene Name: | calmodulin 2 pseudogene 2 |
| Gene Alias: | SAR1|SARA1|Sara|masra2 |
| Gene Description: | secretion associated Ras related GTPase 1A |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
