Difference between revisions of "TSS:Hg 105398.1"
From referenceTSS
| Line 8: | Line 8: | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=9 | |distance=9 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-7515 |
|end=70610308 | |end=70610308 | ||
|end_of_center_position=70610304 | |end_of_center_position=70610304 | ||
|entrez_id=5551 | |entrez_id=5551 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias= | + | |gene_alias=HPLH2{{!}}P1{{!}}PFP |
|gene_description=perforin 1 | |gene_description=perforin 1 | ||
|gene_name=PRF1 | |gene_name=PRF1 | ||
| Line 26: | Line 26: | ||
|start_of_center_position=70610303 | |start_of_center_position=70610303 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-37(GCCCTTATAAAA,-,0.00),-35(CCTTATAAAAGG,+,0.00),-35(CCTTATAAAAGG,-,0.00) |
|transcript_name=BC009051 | |transcript_name=BC009051 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 18:13, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70610303 |
|---|---|
| End of the center position in the TSS region: | 70610304 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC009051 |
|---|---|
| Distance: | 9 |
| Num_trans: | 1 |
| All_trans: | BC009051:9 |
TATA-Box annotation
| Distance to TSS: | -7515 |
|---|---|
| Nearest PromoterID: | NM_005041 |
| Entrez ID: | 5551 |
| Nearest Unigene: | Hs.2200 |
| Nearest Refseq: | NM_005041 |
| Nearest Ensembl: | ENSG00000180644 |
| Gene Name: | PRF1 |
| Gene Alias: | HPLH2|P1|PFP |
| Gene Description: | perforin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -37(GCCCTTATAAAA,-,0.00),-35(CCTTATAAAAGG,+,0.00),-35(CCTTATAAAAGG,-,0.00) |
