Difference between revisions of "TSS:Hg 105406.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SPL= | |SPL= | ||
| − | |all_trans=AK314615:25 | + | |all_trans=LF322578:-12 MA558155:-12 AK314615:25 LF322577:41 MA558154:41 LF322579:-132 MA558156:-132 AJ011304:-308 AB033078:-370 ENST00000486993.1:-379 BC051238:-379 BC068061:-379 BC052991:-380 ENST00000373202.8:-392 NM_003901:-392 LF385457:-392 MA621034:-392 LF208760:-393 MA444337:-393 LF322576:451 MA558153:451 AB384155:495 KJ897928:495 AF144638:495 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=-12 |
|distance_to_tss=401 | |distance_to_tss=401 | ||
|end=70816359 | |end=70816359 | ||
| + | |end_of_center_position=70816350 | ||
|entrez_id=8879 | |entrez_id=8879 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=S1PL | + | |gene_alias=NPHS14{{!}}S1PL{{!}}SPL |
|gene_description=sphingosine-1-phosphate lyase 1 | |gene_description=sphingosine-1-phosphate lyase 1 | ||
|gene_id=8879 | |gene_id=8879 | ||
| − | |gene_name= | + | |gene_name=SGPL1 |
|gene_source=HGNC:10817 | |gene_source=HGNC:10817 | ||
|gene_symbol=SGPL1 | |gene_symbol=SGPL1 | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_003901 | |nearest_refseq=NM_003901 | ||
|nearest_unigene=Hs.499984 | |nearest_unigene=Hs.499984 | ||
| − | |num_trans= | + | |num_trans=24 |
|species=human | |species=human | ||
|start=70816339 | |start=70816339 | ||
| + | |start_of_center_position=70816349 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF322578 MA558155 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105406.1 | |tss_id=hg_105406.1 | ||
Latest revision as of 18:13, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70816349 |
|---|---|
| End of the center position in the TSS region: | 70816350 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF322578 MA558155 |
|---|---|
| Distance: | -12 |
| Num_trans: | 24 |
| All_trans: | LF322578:-12 MA558155:-12 AK314615:25 LF322577:41 MA558154:41 LF322579:-132 MA558156:-132 AJ011304:-308 AB033078:-370 ENST00000486993.1:-379 BC051238:-379 BC068061:-379 BC052991:-380 ENST00000373202.8:-392 NM_003901:-392 LF385457:-392 MA621034:-392 LF208760:-393 MA444337:-393 LF322576:451 MA558153:451 AB384155:495 KJ897928:495 AF144638:495 |
TATA-Box annotation
| Distance to TSS: | 401 |
|---|---|
| Nearest PromoterID: | NM_003901 |
| Entrez ID: | 8879 |
| Nearest Unigene: | Hs.499984 |
| Nearest Refseq: | NM_003901 |
| Nearest Ensembl: | ENSG00000166224 |
| Gene Name: | SGPL1 |
| Gene Alias: | NPHS14|S1PL|SPL |
| Gene Description: | sphingosine-1-phosphate lyase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
