Difference between revisions of "TSS:Hg 105411.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=806 |entrez_id=8879 |gc_percent=0.517413 |gene_alias=S1PL|SPL |gene_description=sphingosine-1-phosphate lyase 1 |gene_name=SGPL...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |SPL= | ||
| + | |all_trans=LF322576:50 MA558153:50 AB384155:94 KJ897928:94 AF144638:94 LF322577:-348 MA558154:-348 AK314615:-364 LF322578:-420 MA558155:-420 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=50 | ||
|distance_to_tss=806 | |distance_to_tss=806 | ||
| + | |end=70816760 | ||
| + | |end_of_center_position=70816754 | ||
|entrez_id=8879 | |entrez_id=8879 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=S1PL | + | |gene_alias=NPHS14{{!}}S1PL{{!}}SPL |
|gene_description=sphingosine-1-phosphate lyase 1 | |gene_description=sphingosine-1-phosphate lyase 1 | ||
| + | |gene_id=8879 | ||
|gene_name=SGPL1 | |gene_name=SGPL1 | ||
| + | |gene_source=HGNC:10817 | ||
| + | |gene_symbol=SGPL1 | ||
| + | |gene_synonyms=SPL | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10817 | ||
|nearest_ensembl=ENSG00000166224 | |nearest_ensembl=ENSG00000166224 | ||
|nearest_promoter_id=NM_003901 | |nearest_promoter_id=NM_003901 | ||
|nearest_refseq=NM_003901 | |nearest_refseq=NM_003901 | ||
|nearest_unigene=Hs.499984 | |nearest_unigene=Hs.499984 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=70816747 | ||
| + | |start_of_center_position=70816753 | ||
| + | |strand=+ | ||
| + | |transcript_name=LF322576 MA558153 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105411.1 | |tss_id=hg_105411.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:13, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 70816753 |
|---|---|
| End of the center position in the TSS region: | 70816754 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF322576 MA558153 |
|---|---|
| Distance: | 50 |
| Num_trans: | 10 |
| All_trans: | LF322576:50 MA558153:50 AB384155:94 KJ897928:94 AF144638:94 LF322577:-348 MA558154:-348 AK314615:-364 LF322578:-420 MA558155:-420 |
TATA-Box annotation
| Distance to TSS: | 806 |
|---|---|
| Nearest PromoterID: | NM_003901 |
| Entrez ID: | 8879 |
| Nearest Unigene: | Hs.499984 |
| Nearest Refseq: | NM_003901 |
| Nearest Ensembl: | ENSG00000166224 |
| Gene Name: | SGPL1 |
| Gene Alias: | NPHS14|S1PL|SPL |
| Gene Description: | sphingosine-1-phosphate lyase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
