Difference between revisions of "TSS:Hg 10542.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000516290 | + | |all_trans=ENST00000516290.1:-1 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 12: | Line 12: | ||
|gene_description=long intergenic non-protein coding RNA 1783 | |gene_description=long intergenic non-protein coding RNA 1783 | ||
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=RNA, variant U1 small nuclear 7 |
|gene_source=HGNC:37500 | |gene_source=HGNC:37500 | ||
|gene_symbol=RNVU1-7 | |gene_symbol=RNVU1-7 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_135764 | |nearest_refseq=NR_135764 | ||
|nearest_unigene=Hs.645945 | |nearest_unigene=Hs.645945 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=16534221 | |start=16534221 | ||
|start_of_center_position=16534222 | |start_of_center_position=16534222 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000516290 | + | |transcript_name=ENST00000516290.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10542.1 | |tss_id=hg_10542.1 | ||
Revision as of 18:13, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 16534222 |
|---|---|
| End of the center position in the TSS region: | 16534223 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000516290.1 |
|---|---|
| Distance: | -1 |
| Num_trans: | 1 |
| All_trans: | ENST00000516290.1:-1 |
TATA-Box annotation
| Distance to TSS: | 1430 |
|---|---|
| Nearest PromoterID: | NR_135764 |
| Entrez ID: | 100132147 |
| Nearest Unigene: | Hs.645945 |
| Nearest Refseq: | NR_135764 |
| Nearest Ensembl: | ENSG00000233421 |
| Gene Name: | RNA, variant U1 small nuclear 7 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1783 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
