Difference between revisions of "TSS:Hg 105463.1"
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{{TSSDetail | {{TSSDetail | ||
|SAP1= | |SAP1= | ||
| − | |all_trans=ENST00000441348 | + | |all_trans=ENST00000441348.1:239 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=239 | |distance=239 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-26856 |
|end=71878117 | |end=71878117 | ||
| + | |end_of_center_position=71878108 | ||
|entrez_id=5660 | |entrez_id=5660 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=GLBA | + | |gene_alias=GLBA{{!}}SAP1 |
|gene_description=prosaposin | |gene_description=prosaposin | ||
|gene_name=PSAP | |gene_name=PSAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000197746 | |nearest_ensembl=ENSG00000197746 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002778 |
|nearest_refseq=NM_002778 | |nearest_refseq=NM_002778 | ||
|nearest_unigene=Hs.523004 | |nearest_unigene=Hs.523004 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=71878097 | |start=71878097 | ||
| + | |start_of_center_position=71878107 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000441348 | + | |transcript_name=ENST00000441348.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105463.1 | |tss_id=hg_105463.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:14, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 71878107 |
|---|---|
| End of the center position in the TSS region: | 71878108 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000441348.1 |
|---|---|
| Distance: | 239 |
| Num_trans: | 1 |
| All_trans: | ENST00000441348.1:239 |
TATA-Box annotation
| Distance to TSS: | -26856 |
|---|---|
| Nearest PromoterID: | NM_002778 |
| Entrez ID: | 5660 |
| Nearest Unigene: | Hs.523004 |
| Nearest Refseq: | NM_002778 |
| Nearest Ensembl: | ENSG00000197746 |
| Gene Name: | PSAP |
| Gene Alias: | GLBA|SAP1 |
| Gene Description: | prosaposin |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
