Difference between revisions of "TSS:Hg 105474.1"
From referenceTSS
| Line 2: | Line 2: | ||
|C6ST1= | |C6ST1= | ||
|HSD= | |HSD= | ||
| − | |all_trans=ENST00000373115. | + | |all_trans=ENST00000373115.5:-141 NM_004273:-141 AB012192:-171 AB017915:-174 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| − | |distance=- | + | |distance=-141 |
| − | |distance_to_tss= | + | |distance_to_tss=149 |
|end=71964552 | |end=71964552 | ||
|end_of_center_position=71964544 | |end_of_center_position=71964544 | ||
|entrez_id=9469 | |entrez_id=9469 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=C6ST | + | |gene_alias=C6ST{{!}}C6ST1{{!}}HSD |
|gene_description=carbohydrate sulfotransferase 3 | |gene_description=carbohydrate sulfotransferase 3 | ||
|gene_id=9469 | |gene_id=9469 | ||
| − | |gene_name=carbohydrate | + | |gene_name=carbohydrate sulfotransferase 3 |
|gene_source=HGNC:1971 | |gene_source=HGNC:1971 | ||
|gene_symbol=CHST3 | |gene_symbol=CHST3 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_004273 | |nearest_refseq=NM_004273 | ||
|nearest_unigene=Hs.158304 | |nearest_unigene=Hs.158304 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=71964535 | |start=71964535 | ||
|start_of_center_position=71964543 | |start_of_center_position=71964543 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000373115. | + | |transcript_name=ENST00000373115.5 NM_004273 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105474.1 | |tss_id=hg_105474.1 | ||
Revision as of 18:15, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 71964543 |
|---|---|
| End of the center position in the TSS region: | 71964544 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000373115.5 NM_004273 |
|---|---|
| Distance: | -141 |
| Num_trans: | 4 |
| All_trans: | ENST00000373115.5:-141 NM_004273:-141 AB012192:-171 AB017915:-174 |
TATA-Box annotation
| Distance to TSS: | 149 |
|---|---|
| Nearest PromoterID: | NM_004273 |
| Entrez ID: | 9469 |
| Nearest Unigene: | Hs.158304 |
| Nearest Refseq: | NM_004273 |
| Nearest Ensembl: | ENSG00000122863 |
| Gene Name: | carbohydrate sulfotransferase 3 |
| Gene Alias: | C6ST|C6ST1|HSD |
| Gene Description: | carbohydrate sulfotransferase 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
