Difference between revisions of "TSS:Hg 10554.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RNU1G3= | |RNU1G3= | ||
| − | |all_trans=ENST00000606899 | + | |all_trans=ENST00000606899.1:8 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 7: | Line 7: | ||
|distance_to_tss=8813 | |distance_to_tss=8813 | ||
|end=16904803 | |end=16904803 | ||
| − | |entrez_id= | + | |end_of_center_position=16904794 |
| + | |entrez_id=6060 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias= | + | |gene_alias=HSD2{{!}}HSD5{{!}}HSD6{{!}}HSD7{{!}}RNU1{{!}}RNU1D2{{!}}RNU1E2{{!}}RNU1F1{{!}}RNU1G1{{!}}RNU1G2{{!}}U1B2{{!}}U1D2{{!}}U1E2{{!}}U1F |
| − | |gene_description= | + | |gene_description=RNA, U1 small nuclear 4 |
| − | |gene_name=RNU1- | + | |gene_name=RNU1-4 |
|gene_type=snRNA | |gene_type=snRNA | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000207389 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_004421 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_004421 |
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=16904783 | |start=16904783 | ||
| + | |start_of_center_position=16904793 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000606899 | + | |transcript_name=ENST00000606899.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10554.1 | |tss_id=hg_10554.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:16, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 16904793 |
|---|---|
| End of the center position in the TSS region: | 16904794 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000606899.1 |
|---|---|
| Distance: | 8 |
| Num_trans: | 1 |
| All_trans: | ENST00000606899.1:8 |
TATA-Box annotation
| Distance to TSS: | 8813 |
|---|---|
| Nearest PromoterID: | NR_004421 |
| Entrez ID: | 6060 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_004421 |
| Nearest Ensembl: | ENSG00000207389 |
| Gene Name: | RNU1-4 |
| Gene Alias: | HSD2|HSD5|HSD6|HSD7|RNU1|RNU1D2|RNU1E2|RNU1F1|RNU1G1|RNU1G2|U1B2|U1D2|U1E2|U1F |
| Gene Description: | RNA, U1 small nuclear 4 |
| Gene Type: | snRNA |
| CpG%: | 0.065 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
