Difference between revisions of "TSS:Hg 105560.1"
From referenceTSS
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|UPA= | |UPA= | ||
|URK= | |URK= | ||
| − | |all_trans= | + | |all_trans=LF212558:-22 MA448135:-22 ENST00000496926.1:-90 ENST00000446342.5:398 ENST00000372764.4:426 NM_001319191:426 NM_001145031:426 NM_002658:426 AK312960:426 AK298560:426 AK297940:426 LF209952:439 MA445529:439 ENST00000494287.1:441 BC013575:452 AH007073:464 M15476:471 D00244:478 LF213792:484 MA449369:484 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance=- | + | |distance=-22 |
|distance_to_tss=-401 | |distance_to_tss=-401 | ||
|end=73910706 | |end=73910706 | ||
| + | |end_of_center_position=73910701 | ||
|entrez_id=5328 | |entrez_id=5328 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias=ATF | + | |gene_alias=ATF{{!}}BDPLT5{{!}}QPD{{!}}UPA{{!}}URK{{!}}u-PA |
| − | |gene_description= | + | |gene_description=plasminogen activator, urokinase |
|gene_id=5328 | |gene_id=5328 | ||
| − | |gene_name= | + | |gene_name=PLAU |
|gene_source=HGNC:9052 | |gene_source=HGNC:9052 | ||
|gene_symbol=PLAU | |gene_symbol=PLAU | ||
| Line 22: | Line 23: | ||
|hgnc_mgi_id=HGNC:9052 | |hgnc_mgi_id=HGNC:9052 | ||
|nearest_ensembl=ENSG00000122861 | |nearest_ensembl=ENSG00000122861 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001145031 |
|nearest_refseq=NM_002658 | |nearest_refseq=NM_002658 | ||
|nearest_unigene=Hs.77274 | |nearest_unigene=Hs.77274 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=73910694 | |start=73910694 | ||
| + | |start_of_center_position=73910700 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF212558 MA448135 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105560.1 | |tss_id=hg_105560.1 | ||
Latest revision as of 18:17, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 73910700 |
|---|---|
| End of the center position in the TSS region: | 73910701 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF212558 MA448135 |
|---|---|
| Distance: | -22 |
| Num_trans: | 20 |
| All_trans: | LF212558:-22 MA448135:-22 ENST00000496926.1:-90 ENST00000446342.5:398 ENST00000372764.4:426 NM_001319191:426 NM_001145031:426 NM_002658:426 AK312960:426 AK298560:426 AK297940:426 LF209952:439 MA445529:439 ENST00000494287.1:441 BC013575:452 AH007073:464 M15476:471 D00244:478 LF213792:484 MA449369:484 |
TATA-Box annotation
| Distance to TSS: | -401 |
|---|---|
| Nearest PromoterID: | NM_001145031 |
| Entrez ID: | 5328 |
| Nearest Unigene: | Hs.77274 |
| Nearest Refseq: | NM_002658 |
| Nearest Ensembl: | ENSG00000122861 |
| Gene Name: | PLAU |
| Gene Alias: | ATF|BDPLT5|QPD|UPA|URK|u-PA |
| Gene Description: | plasminogen activator, urokinase |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
