Difference between revisions of "TSS:Hg 105583.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF333238:68 MA568815:68 LF333240:300 MA568817:300 LF333236:-476 MA568813:-476 LF333241:497 MA568818:497 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=68 |
| − | |distance_to_tss= | + | |distance_to_tss=31340 |
|end=74119507 | |end=74119507 | ||
|end_of_center_position=74119488 | |end_of_center_position=74119488 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=adaptor related protein complex 3 mu 1 | + | |gene_description=adaptor related protein complex 3 subunit mu 1 |
|gene_name=AP3M1 | |gene_name=AP3M1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 16: | Line 17: | ||
|nearest_refseq=NM_012095 | |nearest_refseq=NM_012095 | ||
|nearest_unigene=Hs.500104 | |nearest_unigene=Hs.500104 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=74119468 | |start=74119468 | ||
|start_of_center_position=74119487 | |start_of_center_position=74119487 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF333238 MA568815 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105583.1 | |tss_id=hg_105583.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:17, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 74119487 |
|---|---|
| End of the center position in the TSS region: | 74119488 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF333238 MA568815 |
|---|---|
| Distance: | 68 |
| Num_trans: | 8 |
| All_trans: | LF333238:68 MA568815:68 LF333240:300 MA568817:300 LF333236:-476 MA568813:-476 LF333241:497 MA568818:497 |
TATA-Box annotation
| Distance to TSS: | 31340 |
|---|---|
| Nearest PromoterID: | NM_001320264 |
| Entrez ID: | 26985 |
| Nearest Unigene: | Hs.500104 |
| Nearest Refseq: | NM_012095 |
| Nearest Ensembl: | ENSG00000185009 |
| Gene Name: | AP3M1 |
| Gene Alias: | - |
| Gene Description: | adaptor related protein complex 3 subunit mu 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
