Difference between revisions of "TSS:Hg 105611.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SMSr= | |SMSr= | ||
| − | |all_trans= | + | |all_trans=ENST00000671800.1:0 BC080593:0 LF384969:0 MA620546:0 ENST00000542569.6:20 NM_001174156:20 NM_144660:20 ENST00000649316.2:56 ENST00000372687.4:73 AK057811:73 EU668332:73 GQ472208:73 LF333468:84 MA569045:84 ENST00000671730.1:-85 LP895198:-125 LF333469:361 MA569046:361 LF333470:417 MA569047:417 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-40 |
|end=75111636 | |end=75111636 | ||
|end_of_center_position=75111616 | |end_of_center_position=75111616 | ||
|entrez_id=142891 | |entrez_id=142891 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
| − | |gene_alias=HEL-177 | + | |gene_alias=HEL-177{{!}}SMSr |
|gene_description=sterile alpha motif domain containing 8 | |gene_description=sterile alpha motif domain containing 8 | ||
|gene_id=142891 | |gene_id=142891 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:26320 | |hgnc_mgi_id=HGNC:26320 | ||
|nearest_ensembl=ENSG00000156671 | |nearest_ensembl=ENSG00000156671 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_144660 |
|nearest_refseq=NM_144660 | |nearest_refseq=NM_144660 | ||
|nearest_unigene=Hs.744986 | |nearest_unigene=Hs.744986 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=75111595 | |start=75111595 | ||
|start_of_center_position=75111615 | |start_of_center_position=75111615 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000671800.1 BC080593 LF384969 MA620546 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105611.1 | |tss_id=hg_105611.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q96LT4 | + | |uniprot_id=Q96LT4 |
}} | }} | ||
Revision as of 18:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 75111615 |
|---|---|
| End of the center position in the TSS region: | 75111616 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000671800.1 BC080593 LF384969 MA620546 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000671800.1:0 BC080593:0 LF384969:0 MA620546:0 ENST00000542569.6:20 NM_001174156:20 NM_144660:20 ENST00000649316.2:56 ENST00000372687.4:73 AK057811:73 EU668332:73 GQ472208:73 LF333468:84 MA569045:84 ENST00000671730.1:-85 LP895198:-125 LF333469:361 MA569046:361 LF333470:417 MA569047:417 |
TATA-Box annotation
| Distance to TSS: | -40 |
|---|---|
| Nearest PromoterID: | NM_144660 |
| Entrez ID: | 142891 |
| Nearest Unigene: | Hs.744986 |
| Nearest Refseq: | NM_144660 |
| Nearest Ensembl: | ENSG00000156671 |
| Gene Name: | sterile alpha motif domain containing 8 |
| Gene Alias: | HEL-177|SMSr |
| Gene Description: | sterile alpha motif domain containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
