Difference between revisions of "TSS:Hg 105613.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SMSr= | |SMSr= | ||
| − | |all_trans=ENST00000542569. | + | |all_trans=ENST00000542569.6:0 NM_001174156:0 NM_144660:0 ENST00000671800.1:-7 BC080593:-7 LF384969:-7 MA620546:-7 ENST00000649316.2:24 ENST00000372687.4:41 AK057811:41 EU668332:41 GQ472208:41 LF333468:52 MA569045:52 ENST00000671730.1:-131 LP895198:-171 LF333469:329 MA569046:329 LF333470:385 MA569047:385 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=-1 |
|end=75111668 | |end=75111668 | ||
|end_of_center_position=75111655 | |end_of_center_position=75111655 | ||
|entrez_id=142891 | |entrez_id=142891 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
| − | |gene_alias=HEL-177 | + | |gene_alias=HEL-177{{!}}SMSr |
|gene_description=sterile alpha motif domain containing 8 | |gene_description=sterile alpha motif domain containing 8 | ||
|gene_id=142891 | |gene_id=142891 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_144660 | |nearest_refseq=NM_144660 | ||
|nearest_unigene=Hs.744986 | |nearest_unigene=Hs.744986 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=75111641 | |start=75111641 | ||
|start_of_center_position=75111654 | |start_of_center_position=75111654 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000542569. | + | |transcript_name=ENST00000542569.6 NM_001174156 NM_144660 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105613.1 | |tss_id=hg_105613.1 | ||
Revision as of 18:18, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 75111654 |
|---|---|
| End of the center position in the TSS region: | 75111655 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000542569.6 NM_001174156 NM_144660 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000542569.6:0 NM_001174156:0 NM_144660:0 ENST00000671800.1:-7 BC080593:-7 LF384969:-7 MA620546:-7 ENST00000649316.2:24 ENST00000372687.4:41 AK057811:41 EU668332:41 GQ472208:41 LF333468:52 MA569045:52 ENST00000671730.1:-131 LP895198:-171 LF333469:329 MA569046:329 LF333470:385 MA569047:385 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_144660 |
| Entrez ID: | 142891 |
| Nearest Unigene: | Hs.744986 |
| Nearest Refseq: | NM_144660 |
| Nearest Ensembl: | ENSG00000156671 |
| Gene Name: | sterile alpha motif domain containing 8 |
| Gene Alias: | HEL-177|SMSr |
| Gene Description: | sterile alpha motif domain containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
