Difference between revisions of "TSS:Hg 105808.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |PSAP= | ||
| + | |PSP-A= | ||
| + | |PSPA= | ||
| + | |SFTP1= | ||
| + | |SFTPA2B= | ||
| + | |SP-2A= | ||
| + | |SP-A= | ||
| + | |SPA2= | ||
| + | |SPAII= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=NA | ||
|distance_to_tss=3400 | |distance_to_tss=3400 | ||
| + | |end=79556475 | ||
| + | |end_of_center_position=79556472 | ||
|entrez_id=729238 | |entrez_id=729238 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=COLEC5 | + | |gene_alias=COLEC5{{!}}PSAP{{!}}PSP-A{{!}}PSPA{{!}}SFTP1{{!}}SFTPA2B{{!}}SP-2A{{!}}SP-A{{!}}SPA2{{!}}SPAII |
|gene_description=surfactant protein A2 | |gene_description=surfactant protein A2 | ||
|gene_name=SFTPA2 | |gene_name=SFTPA2 | ||
| Line 12: | Line 25: | ||
|nearest_refseq=NM_001098668 | |nearest_refseq=NM_001098668 | ||
|nearest_unigene=Hs.523084 | |nearest_unigene=Hs.523084 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=79556467 | ||
| + | |start_of_center_position=79556471 | ||
| + | |strand=+ | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_105808.1 | |tss_id=hg_105808.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:22, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 79556471 |
|---|---|
| End of the center position in the TSS region: | 79556472 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 3400 |
|---|---|
| Nearest PromoterID: | NM_001320814 |
| Entrez ID: | 729238 |
| Nearest Unigene: | Hs.523084 |
| Nearest Refseq: | NM_001098668 |
| Nearest Ensembl: | ENSG00000185303 |
| Gene Name: | SFTPA2 |
| Gene Alias: | COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII |
| Gene Description: | surfactant protein A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
