Difference between revisions of "TSS:Hg 105823.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |PSAP= | ||
| + | |PSP-A= | ||
| + | |PSPA= | ||
| + | |SFTP1= | ||
| + | |SFTPA1B= | ||
| + | |SP-A= | ||
| + | |SP-A1= | ||
| + | |SPA= | ||
| + | |SPA1= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=NA | ||
|distance_to_tss=3818 | |distance_to_tss=3818 | ||
| + | |end=79614764 | ||
| + | |end_of_center_position=79614757 | ||
|entrez_id=653509 | |entrez_id=653509 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=COLEC4 | + | |gene_alias=COLEC4{{!}}PSAP{{!}}PSP-A{{!}}PSPA{{!}}SFTP1{{!}}SFTPA1B{{!}}SP-A{{!}}SP-A1{{!}}SPA{{!}}SPA1 |
|gene_description=surfactant protein A1 | |gene_description=surfactant protein A1 | ||
|gene_name=SFTPA1 | |gene_name=SFTPA1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000122852 | |nearest_ensembl=ENSG00000122852 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001164647 |
|nearest_refseq=NM_005411 | |nearest_refseq=NM_005411 | ||
|nearest_unigene=Hs.535295 | |nearest_unigene=Hs.535295 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=79614749 | ||
| + | |start_of_center_position=79614756 | ||
| + | |strand=+ | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_105823.1 | |tss_id=hg_105823.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:23, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 79614756 |
|---|---|
| End of the center position in the TSS region: | 79614757 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 3818 |
|---|---|
| Nearest PromoterID: | NM_001164647 |
| Entrez ID: | 653509 |
| Nearest Unigene: | Hs.535295 |
| Nearest Refseq: | NM_005411 |
| Nearest Ensembl: | ENSG00000122852 |
| Gene Name: | SFTPA1 |
| Gene Alias: | COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 |
| Gene Description: | surfactant protein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
