Difference between revisions of "TSS:Hg 105852.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000422847.1:0 NR_038464:0 | + | |all_trans=ENST00000422847.1:0 NR_038464:0 BC048265:0 ENST00000671081.1:-73 ENST00000660450.1:-329 BC009626:370 KY952902:-481 ENST00000432308.1:494 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 15: | Line 15: | ||
|gene_source=HGNC:45114 | |gene_source=HGNC:45114 | ||
|gene_symbol=LINC00857 | |gene_symbol=LINC00857 | ||
| − | |gene_synonyms= | + | |gene_synonyms=HUMT |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:45114 | |hgnc_mgi_id=HGNC:45114 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_038464 | |nearest_refseq=NR_038464 | ||
|nearest_unigene=Hs.365566 | |nearest_unigene=Hs.365566 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=80207700 | |start=80207700 | ||
|start_of_center_position=80207707 | |start_of_center_position=80207707 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000422847.1 NR_038464 | + | |transcript_name=ENST00000422847.1 NR_038464 BC048265 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105852.1 | |tss_id=hg_105852.1 | ||
Revision as of 18:23, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 80207707 |
|---|---|
| End of the center position in the TSS region: | 80207708 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000422847.1 NR_038464 BC048265 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENST00000422847.1:0 NR_038464:0 BC048265:0 ENST00000671081.1:-73 ENST00000660450.1:-329 BC009626:370 KY952902:-481 ENST00000432308.1:494 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NR_038464 |
| Entrez ID: | 439990 |
| Nearest Unigene: | Hs.365566 |
| Nearest Refseq: | NR_038464 |
| Nearest Ensembl: | ENSG00000237523 |
| Gene Name: | long intergenic non-protein coding RNA 857 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 857 |
| Gene Type: | ncRNA |
| CpG%: | 0.07 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
