Difference between revisions of "TSS:Hg 105870.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TM4SF14= | |TM4SF14= | ||
| − | |all_trans= | + | |all_trans=BC093016:0 ENST00000481124.5:-11 ENST00000372158.6:22 NM_001351267:22 NM_030927:22 NM_001351266:22 NM_001351268:22 NM_001128309:22 AK295321:23 AL136638:23 AK074558:23 LF210016:-27 MA445593:-27 AF311903:29 ENST00000372157.6:34 ENST00000469149.1:41 ENST00000372164.7:42 BC002920:48 ENST00000341863.10:67 ENST00000429989.7:-110 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.195 | |cpg_percent=0.195 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=17 |
|end=80454288 | |end=80454288 | ||
|end_of_center_position=80454282 | |end_of_center_position=80454282 | ||
|entrez_id=81619 | |entrez_id=81619 | ||
|gc_percent=0.825871 | |gc_percent=0.825871 | ||
| − | |gene_alias=DC-TM4F2 | + | |gene_alias=DC-TM4F2{{!}}TM4SF14{{!}}tspan-14 |
|gene_description=tetraspanin 14 | |gene_description=tetraspanin 14 | ||
|gene_id=81619 | |gene_id=81619 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:23303 | |hgnc_mgi_id=HGNC:23303 | ||
|nearest_ensembl=ENSG00000108219 | |nearest_ensembl=ENSG00000108219 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351268 |
|nearest_refseq=NM_030927 | |nearest_refseq=NM_030927 | ||
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.308615 |
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=80454275 | |start=80454275 | ||
|start_of_center_position=80454281 | |start_of_center_position=80454281 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC093016 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105870.1 | |tss_id=hg_105870.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:24, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 80454281 |
|---|---|
| End of the center position in the TSS region: | 80454282 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC093016 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | BC093016:0 ENST00000481124.5:-11 ENST00000372158.6:22 NM_001351267:22 NM_030927:22 NM_001351266:22 NM_001351268:22 NM_001128309:22 AK295321:23 AL136638:23 AK074558:23 LF210016:-27 MA445593:-27 AF311903:29 ENST00000372157.6:34 ENST00000469149.1:41 ENST00000372164.7:42 BC002920:48 ENST00000341863.10:67 ENST00000429989.7:-110 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001351268 |
| Entrez ID: | 81619 |
| Nearest Unigene: | Hs.308615 |
| Nearest Refseq: | NM_030927 |
| Nearest Ensembl: | ENSG00000108219 |
| Gene Name: | tetraspanin 14 |
| Gene Alias: | DC-TM4F2|TM4SF14|tspan-14 |
| Gene Description: | tetraspanin 14 |
| Gene Type: | protein-coding |
| CpG%: | 0.195 |
| GC%: | 0.825871 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
