Difference between revisions of "TSS:Hg 105872.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TM4SF14= | |TM4SF14= | ||
| − | |all_trans=ENST00000372157.6:0 ENST00000469149.1:0 ENST00000372164.7:0 | + | |all_trans=ENST00000372158.6:0 ENST00000372157.6:0 ENST00000469149.1:0 ENST00000372164.7:0 NM_001351267:0 NM_030927:0 NM_001351266:0 NM_001351268:0 NM_001128309:0 AK295321:0 AL136638:0 AK074558:0 AF311903:0 BC002920:5 BC093016:-15 ENST00000341863.10:24 ENST00000481124.5:-32 LF210016:-48 MA445593:-48 ENST00000429989.7:-131 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.195 | |cpg_percent=0.195 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=80454331 | |end=80454331 | ||
|end_of_center_position=80454314 | |end_of_center_position=80454314 | ||
|entrez_id=81619 | |entrez_id=81619 | ||
|gc_percent=0.835821 | |gc_percent=0.835821 | ||
| − | |gene_alias=DC-TM4F2 | + | |gene_alias=DC-TM4F2{{!}}TM4SF14{{!}}tspan-14 |
|gene_description=tetraspanin 14 | |gene_description=tetraspanin 14 | ||
|gene_id=81619 | |gene_id=81619 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:23303 | |hgnc_mgi_id=HGNC:23303 | ||
|nearest_ensembl=ENSG00000108219 | |nearest_ensembl=ENSG00000108219 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351267 |
|nearest_refseq=NM_030927 | |nearest_refseq=NM_030927 | ||
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.308615 |
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=80454296 | |start=80454296 | ||
|start_of_center_position=80454313 | |start_of_center_position=80454313 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000372157.6 ENST00000469149.1 ENST00000372164.7 | + | |transcript_name=ENST00000372158.6 ENST00000372157.6 ENST00000469149.1 ENST00000372164.7 NM_001351267 NM_030927 NM_001351266 NM_001351268 NM_001128309 AK295321 AL136638 AK074558 AF311903 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105872.1 | |tss_id=hg_105872.1 | ||
Revision as of 18:24, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 80454313 |
|---|---|
| End of the center position in the TSS region: | 80454314 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372158.6 ENST00000372157.6 ENST00000469149.1 ENST00000372164.7 NM_001351267 NM_030927 NM_001351266 NM_001351268 NM_001128309 AK295321 AL136638 AK074558 AF311903 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000372158.6:0 ENST00000372157.6:0 ENST00000469149.1:0 ENST00000372164.7:0 NM_001351267:0 NM_030927:0 NM_001351266:0 NM_001351268:0 NM_001128309:0 AK295321:0 AL136638:0 AK074558:0 AF311903:0 BC002920:5 BC093016:-15 ENST00000341863.10:24 ENST00000481124.5:-32 LF210016:-48 MA445593:-48 ENST00000429989.7:-131 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001351267 |
| Entrez ID: | 81619 |
| Nearest Unigene: | Hs.308615 |
| Nearest Refseq: | NM_030927 |
| Nearest Ensembl: | ENSG00000108219 |
| Gene Name: | tetraspanin 14 |
| Gene Alias: | DC-TM4F2|TM4SF14|tspan-14 |
| Gene Description: | tetraspanin 14 |
| Gene Type: | protein-coding |
| CpG%: | 0.195 |
| GC%: | 0.835821 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
