Difference between revisions of "TSS:Hg 105932.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PRCAD= | |PRCAD= | ||
|RP65= | |RP65= | ||
| − | |all_trans=ENST00000623527. | + | |all_trans=ENST00000623527.4:0 NM_001171971:0 NM_033100:0 AB593154:77 AB593155:91 ENST00000332904.7:92 BC038799:98 AB463200:202 AB053448:204 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=5 |
|end=84194558 | |end=84194558 | ||
|end_of_center_position=84194543 | |end_of_center_position=84194543 | ||
|entrez_id=92211 | |entrez_id=92211 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=CORD15 | + | |gene_alias=CORD15{{!}}PCDH21{{!}}PRCAD{{!}}RP65 |
|gene_description=cadherin related family member 1 | |gene_description=cadherin related family member 1 | ||
|gene_id=92211 | |gene_id=92211 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_033100 | |nearest_refseq=NM_033100 | ||
|nearest_unigene=Hs.137556 | |nearest_unigene=Hs.137556 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=84194526 | |start=84194526 | ||
|start_of_center_position=84194542 | |start_of_center_position=84194542 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000623527. | + | |transcript_name=ENST00000623527.4 NM_001171971 NM_033100 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105932.1 | |tss_id=hg_105932.1 | ||
Revision as of 18:25, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 84194542 |
|---|---|
| End of the center position in the TSS region: | 84194543 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000623527.4 NM_001171971 NM_033100 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000623527.4:0 NM_001171971:0 NM_033100:0 AB593154:77 AB593155:91 ENST00000332904.7:92 BC038799:98 AB463200:202 AB053448:204 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_001171971 |
| Entrez ID: | 92211 |
| Nearest Unigene: | Hs.137556 |
| Nearest Refseq: | NM_033100 |
| Nearest Ensembl: | ENSG00000148600 |
| Gene Name: | cadherin related family member 1 |
| Gene Alias: | CORD15|PCDH21|PRCAD|RP65 |
| Gene Description: | cadherin related family member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
