Difference between revisions of "TSS:Hg 105936.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PRCAD= | |PRCAD= | ||
|RP65= | |RP65= | ||
| − | |all_trans=BC038799:-38 ENST00000332904.7 | + | |all_trans=BC038799:-38 ENST00000332904.7:-44 AB593155:-45 AB463200:49 AB053448:51 AB593154:-59 ENST00000623527.4:-157 NM_001171971:-157 NM_033100:-157 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=-38 | |distance=-38 | ||
| − | |distance_to_tss= | + | |distance_to_tss=165 |
|end=84194711 | |end=84194711 | ||
|end_of_center_position=84194703 | |end_of_center_position=84194703 | ||
|entrez_id=92211 | |entrez_id=92211 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=CORD15 | + | |gene_alias=CORD15{{!}}PCDH21{{!}}PRCAD{{!}}RP65 |
|gene_description=cadherin related family member 1 | |gene_description=cadherin related family member 1 | ||
|gene_id=92211 | |gene_id=92211 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:14550 | |hgnc_mgi_id=HGNC:14550 | ||
|nearest_ensembl=ENSG00000148600 | |nearest_ensembl=ENSG00000148600 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001171971 |
|nearest_refseq=NM_033100 | |nearest_refseq=NM_033100 | ||
|nearest_unigene=Hs.137556 | |nearest_unigene=Hs.137556 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=84194693 | |start=84194693 | ||
Revision as of 18:25, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 84194702 |
|---|---|
| End of the center position in the TSS region: | 84194703 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC038799 |
|---|---|
| Distance: | -38 |
| Num_trans: | 9 |
| All_trans: | BC038799:-38 ENST00000332904.7:-44 AB593155:-45 AB463200:49 AB053448:51 AB593154:-59 ENST00000623527.4:-157 NM_001171971:-157 NM_033100:-157 |
TATA-Box annotation
| Distance to TSS: | 165 |
|---|---|
| Nearest PromoterID: | NM_001171971 |
| Entrez ID: | 92211 |
| Nearest Unigene: | Hs.137556 |
| Nearest Refseq: | NM_033100 |
| Nearest Ensembl: | ENSG00000148600 |
| Gene Name: | cadherin related family member 1 |
| Gene Alias: | CORD15|PCDH21|PRCAD|RP65 |
| Gene Description: | cadherin related family member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
