Difference between revisions of "TSS:Hg 105942.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000469446.5:0 | + | |all_trans=ENST00000469446.5:0 ENST00000358110.7:0 ENST00000478727.6:0 ENST00000651237.1:0 ENST00000650774.1:0 ENST00000652122.1:0 ENST00000652092.2:0 NM_001012722:0 NM_001012720:0 NM_002921:0 BX641033:0 U14910:0 ENST00000483660.5:4 ENST00000650682.1:-9 ENST00000359452.9:20 BC011349:20 ENST00000372092.3:27 BC008094:27 BC042536:28 ENST00000483771.5:30 BC027987:30 ENST00000483744.6:32 KJ905896:32 CU675929:32 KU178307:32 KU178308:32 DQ892074:32 DQ895267:32 KJ897466:32 KR709673:32 KR709674:32 KR709675:32 ENST00000651155.1:-112 ENST00000652310.1:-115 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:9990 | |hgnc_mgi_id=HGNC:9990 | ||
|nearest_ensembl=ENSG00000148604 | |nearest_ensembl=ENSG00000148604 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002921 |
|nearest_refseq=NM_002921 | |nearest_refseq=NM_002921 | ||
|nearest_unigene=Hs.1544 | |nearest_unigene=Hs.1544 | ||
| − | |num_trans= | + | |num_trans=34 |
|species=human | |species=human | ||
|start=84245046 | |start=84245046 | ||
|start_of_center_position=84245052 | |start_of_center_position=84245052 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00) |
| − | |transcript_name=ENST00000469446.5 ENST00000478727 | + | |transcript_name=ENST00000469446.5 ENST00000358110.7 ENST00000478727.6 ENST00000651237.1 ENST00000650774.1 ENST00000652122.1 ENST00000652092.2 NM_001012722 NM_001012720 NM_002921 BX641033 U14910 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105942.1 | |tss_id=hg_105942.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P47804 | + | |uniprot_id=A0A0S2Z494 A0A494C063 A0A494C170 A0A494C187 A0A494C1A1 P47804 |
}} | }} | ||
Revision as of 18:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 84245052 |
|---|---|
| End of the center position in the TSS region: | 84245053 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000469446.5 ENST00000358110.7 ENST00000478727.6 ENST00000651237.1 ENST00000650774.1 ENST00000652122.1 ENST00000652092.2 NM_001012722 NM_001012720 NM_002921 BX641033 U14910 |
|---|---|
| Distance: | 0 |
| Num_trans: | 34 |
| All_trans: | ENST00000469446.5:0 ENST00000358110.7:0 ENST00000478727.6:0 ENST00000651237.1:0 ENST00000650774.1:0 ENST00000652122.1:0 ENST00000652092.2:0 NM_001012722:0 NM_001012720:0 NM_002921:0 BX641033:0 U14910:0 ENST00000483660.5:4 ENST00000650682.1:-9 ENST00000359452.9:20 BC011349:20 ENST00000372092.3:27 BC008094:27 BC042536:28 ENST00000483771.5:30 BC027987:30 ENST00000483744.6:32 KJ905896:32 CU675929:32 KU178307:32 KU178308:32 DQ892074:32 DQ895267:32 KJ897466:32 KR709673:32 KR709674:32 KR709675:32 ENST00000651155.1:-112 ENST00000652310.1:-115 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_002921 |
| Entrez ID: | 5995 |
| Nearest Unigene: | Hs.1544 |
| Nearest Refseq: | NM_002921 |
| Nearest Ensembl: | ENSG00000148604 |
| Gene Name: | retinal G protein coupled receptor |
| Gene Alias: | RP44 |
| Gene Description: | retinal G protein coupled receptor |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00) |
