Difference between revisions of "TSS:Hg 10595.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=MG828428:-48 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-48 |
| − | |distance_to_tss=- | + | |distance_to_tss=-1801 |
|end=17441486 | |end=17441486 | ||
|end_of_center_position=17441478 | |end_of_center_position=17441478 | ||
| Line 16: | Line 17: | ||
|nearest_refseq=NM_018715 | |nearest_refseq=NM_018715 | ||
|nearest_unigene=Hs.380857 | |nearest_unigene=Hs.380857 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=17441469 | |start=17441469 | ||
|start_of_center_position=17441477 | |start_of_center_position=17441477 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-53(TCTTTTAAGCTG,+,0.00),-33(CATTATAAAGGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=MG828428 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_10595.1 | |tss_id=hg_10595.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:26, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17441477 |
|---|---|
| End of the center position in the TSS region: | 17441478 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | MG828428 |
|---|---|
| Distance: | -48 |
| Num_trans: | 1 |
| All_trans: | MG828428:-48 |
TATA-Box annotation
| Distance to TSS: | -1801 |
|---|---|
| Nearest PromoterID: | NM_018715 |
| Entrez ID: | 55920 |
| Nearest Unigene: | Hs.380857 |
| Nearest Refseq: | NM_018715 |
| Nearest Ensembl: | ENSG00000179051 |
| Gene Name: | RCC2 |
| Gene Alias: | TD-60 |
| Gene Description: | regulator of chromosome condensation 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -53(TCTTTTAAGCTG,+,0.00),-33(CATTATAAAGGG,-,0.00) |
