Difference between revisions of "TSS:Hg 105972.1"
From referenceTSS
| Line 10: | Line 10: | ||
|PDLIM6= | |PDLIM6= | ||
|ZASP= | |ZASP= | ||
| − | |all_trans= | + | |all_trans=ENST00000623056.4:93 AK304760:93 AK300692:96 ENST00000263066.11:97 ENST00000429277.7:97 ENST00000361373.9:97 NM_001080115:97 NM_001080114:97 NM_001171611:97 NM_001368067:97 NM_007078:97 NM_001368065:97 NM_001368066:97 NM_001171610:97 AK297871:97 NM_001080116:150 ENST00000372066.8:199 AJ133766:199 BC010929:253 AB014513:257 BC111457:273 KJ898368:276 KR710344:276 KR710345:276 KR710346:276 KR710347:276 AB383921:277 ENST00000372056.8:278 ENST00000542786.2:278 ENST00000623007.3:278 KU178543:278 KU178544:278 KU178545:278 AF276807:278 AF276808:278 AF276809:278 KF772970:278 AJ133767:278 AJ133768:278 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=93 |
| − | |distance_to_tss=- | + | |distance_to_tss=-100 |
|end=86668414 | |end=86668414 | ||
|end_of_center_position=86668412 | |end_of_center_position=86668412 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=CMD1C | + | |gene_alias=CMD1C{{!}}CMH24{{!}}CMPD3{{!}}CYPHER{{!}}LDB3Z1{{!}}LDB3Z4{{!}}LVNC3{{!}}MFM4{{!}}ORACLE{{!}}PDLIM6{{!}}ZASP |
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
|gene_id=11155 | |gene_id=11155 | ||
| Line 29: | Line 29: | ||
|hgnc_mgi_id=HGNC:15710 | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001080114 |
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| − | |num_trans= | + | |num_trans=39 |
|species=human | |species=human | ||
|start=86668408 | |start=86668408 | ||
|start_of_center_position=86668411 | |start_of_center_position=86668411 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000623056.4 AK304760 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105972.1 | |tss_id=hg_105972.1 | ||
Revision as of 18:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 86668411 |
|---|---|
| End of the center position in the TSS region: | 86668412 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000623056.4 AK304760 |
|---|---|
| Distance: | 93 |
| Num_trans: | 39 |
| All_trans: | ENST00000623056.4:93 AK304760:93 AK300692:96 ENST00000263066.11:97 ENST00000429277.7:97 ENST00000361373.9:97 NM_001080115:97 NM_001080114:97 NM_001171611:97 NM_001368067:97 NM_007078:97 NM_001368065:97 NM_001368066:97 NM_001171610:97 AK297871:97 NM_001080116:150 ENST00000372066.8:199 AJ133766:199 BC010929:253 AB014513:257 BC111457:273 KJ898368:276 KR710344:276 KR710345:276 KR710346:276 KR710347:276 AB383921:277 ENST00000372056.8:278 ENST00000542786.2:278 ENST00000623007.3:278 KU178543:278 KU178544:278 KU178545:278 AF276807:278 AF276808:278 AF276809:278 KF772970:278 AJ133767:278 AJ133768:278 |
TATA-Box annotation
| Distance to TSS: | -100 |
|---|---|
| Nearest PromoterID: | NM_001080114 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00) |
