Difference between revisions of "TSS:Hg 105976.1"
From referenceTSS
| Line 10: | Line 10: | ||
|PDLIM6= | |PDLIM6= | ||
|ZASP= | |ZASP= | ||
| − | |all_trans= | + | |all_trans=ENST00000372056.8:-28 ENST00000542786.2:-28 ENST00000623007.3:-28 KU178543:-28 KU178544:-28 KU178545:-28 AF276807:-28 AF276808:-28 AF276809:-28 KF772970:-28 AJ133767:-28 AJ133768:-28 AB383921:-29 KJ898368:-30 KR710344:-30 KR710345:-30 KR710346:-30 KR710347:-30 BC111457:-33 AB014513:-49 BC010929:-53 ENST00000372066.8:-107 AJ133766:-107 NM_001080116:-156 ENST00000263066.11:-209 ENST00000429277.7:-209 ENST00000361373.9:-209 NM_001080115:-209 NM_001080114:-209 NM_001171611:-209 NM_001368067:-209 NM_007078:-209 NM_001368065:-209 NM_001368066:-209 NM_001171610:-209 AK297871:-209 AK300692:-210 ENST00000623056.4:-213 AK304760:-213 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=-28 | |distance=-28 | ||
| − | |distance_to_tss= | + | |distance_to_tss=162 |
|end=86668733 | |end=86668733 | ||
|end_of_center_position=86668727 | |end_of_center_position=86668727 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=CMD1C | + | |gene_alias=CMD1C{{!}}CMH24{{!}}CMPD3{{!}}CYPHER{{!}}LDB3Z1{{!}}LDB3Z4{{!}}LVNC3{{!}}MFM4{{!}}ORACLE{{!}}PDLIM6{{!}}ZASP |
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
|gene_id=11155 | |gene_id=11155 | ||
| Line 29: | Line 29: | ||
|hgnc_mgi_id=HGNC:15710 | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001080116 |
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| − | |num_trans= | + | |num_trans=39 |
|species=human | |species=human | ||
|start=86668719 | |start=86668719 | ||
|start_of_center_position=86668726 | |start_of_center_position=86668726 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000542786. | + | |transcript_name=ENST00000372056.8 ENST00000542786.2 ENST00000623007.3 KU178543 KU178544 KU178545 AF276807 AF276808 AF276809 KF772970 AJ133767 AJ133768 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105976.1 | |tss_id=hg_105976.1 | ||
Revision as of 18:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 86668726 |
|---|---|
| End of the center position in the TSS region: | 86668727 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372056.8 ENST00000542786.2 ENST00000623007.3 KU178543 KU178544 KU178545 AF276807 AF276808 AF276809 KF772970 AJ133767 AJ133768 |
|---|---|
| Distance: | -28 |
| Num_trans: | 39 |
| All_trans: | ENST00000372056.8:-28 ENST00000542786.2:-28 ENST00000623007.3:-28 KU178543:-28 KU178544:-28 KU178545:-28 AF276807:-28 AF276808:-28 AF276809:-28 KF772970:-28 AJ133767:-28 AJ133768:-28 AB383921:-29 KJ898368:-30 KR710344:-30 KR710345:-30 KR710346:-30 KR710347:-30 BC111457:-33 AB014513:-49 BC010929:-53 ENST00000372066.8:-107 AJ133766:-107 NM_001080116:-156 ENST00000263066.11:-209 ENST00000429277.7:-209 ENST00000361373.9:-209 NM_001080115:-209 NM_001080114:-209 NM_001171611:-209 NM_001368067:-209 NM_007078:-209 NM_001368065:-209 NM_001368066:-209 NM_001171610:-209 AK297871:-209 AK300692:-210 ENST00000623056.4:-213 AK304760:-213 |
TATA-Box annotation
| Distance to TSS: | 162 |
|---|---|
| Nearest PromoterID: | NM_001080116 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
