Difference between revisions of "TSS:Hg 105977.1"
From referenceTSS
| Line 10: | Line 10: | ||
|PDLIM6= | |PDLIM6= | ||
|ZASP= | |ZASP= | ||
| − | |all_trans= | + | |all_trans=ENST00000372056.8:-54 ENST00000542786.2:-54 ENST00000623007.3:-54 KU178543:-54 KU178544:-54 KU178545:-54 AF276807:-54 AF276808:-54 AF276809:-54 KF772970:-54 AJ133767:-54 AJ133768:-54 AB383921:-55 KJ898368:-56 KR710344:-56 KR710345:-56 KR710346:-56 KR710347:-56 BC111457:-59 AB014513:-75 BC010929:-79 ENST00000372066.8:-133 AJ133766:-133 NM_001080116:-182 ENST00000263066.11:-235 ENST00000429277.7:-235 ENST00000361373.9:-235 NM_001080115:-235 NM_001080114:-235 NM_001171611:-235 NM_001368067:-235 NM_007078:-235 NM_001368065:-235 NM_001368066:-235 NM_001171610:-235 AK297871:-235 AK300692:-236 ENST00000623056.4:-239 AK304760:-239 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=-54 | |distance=-54 | ||
| − | |distance_to_tss= | + | |distance_to_tss=187 |
|end=86668756 | |end=86668756 | ||
|end_of_center_position=86668751 | |end_of_center_position=86668751 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=CMD1C | + | |gene_alias=CMD1C{{!}}CMH24{{!}}CMPD3{{!}}CYPHER{{!}}LDB3Z1{{!}}LDB3Z4{{!}}LVNC3{{!}}MFM4{{!}}ORACLE{{!}}PDLIM6{{!}}ZASP |
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
|gene_id=11155 | |gene_id=11155 | ||
| Line 29: | Line 29: | ||
|hgnc_mgi_id=HGNC:15710 | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001080116 |
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| − | |num_trans= | + | |num_trans=39 |
|species=human | |species=human | ||
|start=86668745 | |start=86668745 | ||
|start_of_center_position=86668750 | |start_of_center_position=86668750 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000542786. | + | |transcript_name=ENST00000372056.8 ENST00000542786.2 ENST00000623007.3 KU178543 KU178544 KU178545 AF276807 AF276808 AF276809 KF772970 AJ133767 AJ133768 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105977.1 | |tss_id=hg_105977.1 | ||
Revision as of 18:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 86668750 |
|---|---|
| End of the center position in the TSS region: | 86668751 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372056.8 ENST00000542786.2 ENST00000623007.3 KU178543 KU178544 KU178545 AF276807 AF276808 AF276809 KF772970 AJ133767 AJ133768 |
|---|---|
| Distance: | -54 |
| Num_trans: | 39 |
| All_trans: | ENST00000372056.8:-54 ENST00000542786.2:-54 ENST00000623007.3:-54 KU178543:-54 KU178544:-54 KU178545:-54 AF276807:-54 AF276808:-54 AF276809:-54 KF772970:-54 AJ133767:-54 AJ133768:-54 AB383921:-55 KJ898368:-56 KR710344:-56 KR710345:-56 KR710346:-56 KR710347:-56 BC111457:-59 AB014513:-75 BC010929:-79 ENST00000372066.8:-133 AJ133766:-133 NM_001080116:-182 ENST00000263066.11:-235 ENST00000429277.7:-235 ENST00000361373.9:-235 NM_001080115:-235 NM_001080114:-235 NM_001171611:-235 NM_001368067:-235 NM_007078:-235 NM_001368065:-235 NM_001368066:-235 NM_001171610:-235 AK297871:-235 AK300692:-236 ENST00000623056.4:-239 AK304760:-239 |
TATA-Box annotation
| Distance to TSS: | 187 |
|---|---|
| Nearest PromoterID: | NM_001080116 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
