Difference between revisions of "TSS:Hg 1060.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000375155.7:0 ENST00000375153. | + | |all_trans=ENST00000375155.7:0 ENST00000375153.8:0 ENST00000469076.5:0 NM_001287531:0 NM_001040125:0 NM_017765:0 NM_001040126:0 NR_109848:0 AK130175:0 AK000327:0 AK125580:0 AK130171:0 AK172745:0 LF357166:1 MA592743:1 ENST00000400548.6:7 BC015324:7 LF206691:-125 MA442268:-125 ENST00000497827.1:395 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-12 |
|end=19312334 | |end=19312334 | ||
|end_of_center_position=19312315 | |end_of_center_position=19312315 | ||
|entrez_id=54896 | |entrez_id=54896 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=- | + | |gene_alias=LAAT-1{{!}}LAAT1{{!}}PQLC2 |
| − | |gene_description= | + | |gene_description=solute carrier family 66 member 1 |
|gene_id=54896 | |gene_id=54896 | ||
| − | |gene_name= | + | |gene_name=solute carrier family 66 member 1 |
|gene_source=HGNC:26001 | |gene_source=HGNC:26001 | ||
| − | |gene_symbol= | + | |gene_symbol=SLC66A1 |
| − | |gene_synonyms=FLJ20320 | + | |gene_synonyms=FLJ20320 LAAT-1 LAAT1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26001 | |hgnc_mgi_id=HGNC:26001 | ||
|nearest_ensembl=ENSG00000040487 | |nearest_ensembl=ENSG00000040487 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001040126 |
|nearest_refseq=NM_017765 | |nearest_refseq=NM_017765 | ||
|nearest_unigene=Hs.647620 | |nearest_unigene=Hs.647620 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=human | |species=human | ||
|start=19312294 | |start=19312294 | ||
|start_of_center_position=19312314 | |start_of_center_position=19312314 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000375155.7 ENST00000375153. | + | |transcript_name=ENST00000375155.7 ENST00000375153.8 ENST00000469076.5 NM_001287531 NM_001040125 NM_017765 NM_001040126 NR_109848 AK130175 AK000327 AK125580 AK130171 AK172745 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_1060.1 | |tss_id=hg_1060.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A024RAE3 E9PL93 Q6ZP29 |
}} | }} | ||
Revision as of 18:27, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19312314 |
|---|---|
| End of the center position in the TSS region: | 19312315 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375155.7 ENST00000375153.8 ENST00000469076.5 NM_001287531 NM_001040125 NM_017765 NM_001040126 NR_109848 AK130175 AK000327 AK125580 AK130171 AK172745 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000375155.7:0 ENST00000375153.8:0 ENST00000469076.5:0 NM_001287531:0 NM_001040125:0 NM_017765:0 NM_001040126:0 NR_109848:0 AK130175:0 AK000327:0 AK125580:0 AK130171:0 AK172745:0 LF357166:1 MA592743:1 ENST00000400548.6:7 BC015324:7 LF206691:-125 MA442268:-125 ENST00000497827.1:395 |
TATA-Box annotation
| Distance to TSS: | -12 |
|---|---|
| Nearest PromoterID: | NM_001040126 |
| Entrez ID: | 54896 |
| Nearest Unigene: | Hs.647620 |
| Nearest Refseq: | NM_017765 |
| Nearest Ensembl: | ENSG00000040487 |
| Gene Name: | solute carrier family 66 member 1 |
| Gene Alias: | LAAT-1|LAAT1|PQLC2 |
| Gene Description: | solute carrier family 66 member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
