Difference between revisions of "TSS:Hg 106019.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000298784.5:0 ENST00000298786. | + | |all_trans=ENST00000298784.5:0 ENST00000298786.5:0 NM_001377161:0 NM_001377160:0 NM_001377159:0 NM_001377158:0 NM_001377170:0 NR_165106:0 NR_165105:0 NM_001377171:0 NM_001377169:0 NM_019054:0 NM_001377168:0 NM_001377167:0 NM_001377172:0 NM_001377165:0 NM_001377164:0 NM_001377163:0 NM_001377162:0 NM_001330112:0 NR_165108:0 NM_001377166:0 AK022978:0 LF384977:0 MA620554:0 |
|bA163M19.1= | |bA163M19.1= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-7 |
|end=87095228 | |end=87095228 | ||
|end_of_center_position=87095199 | |end_of_center_position=87095199 | ||
|entrez_id=54537 | |entrez_id=54537 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=FAM35A1 | + | |gene_alias=FAM35A{{!}}FAM35A1{{!}}RINN2{{!}}bA163M19.1 |
| − | |gene_description= | + | |gene_description=shieldin complex subunit 2 |
|gene_id=54537 | |gene_id=54537 | ||
| − | |gene_name= | + | |gene_name=shieldin complex subunit 2 |
|gene_source=HGNC:28773 | |gene_source=HGNC:28773 | ||
| − | |gene_symbol= | + | |gene_symbol=SHLD2 |
| − | |gene_synonyms=FAM35A1 MGC5560 bA163M19.1 | + | |gene_synonyms=FAM35A1 MGC5560 RINN2 bA163M19.1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28773 | |hgnc_mgi_id=HGNC:28773 | ||
|nearest_ensembl=ENSG00000122376 | |nearest_ensembl=ENSG00000122376 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001330112 |
|nearest_refseq=NM_019054 | |nearest_refseq=NM_019054 | ||
|nearest_unigene=Hs.500419 | |nearest_unigene=Hs.500419 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=87095169 | |start=87095169 | ||
|start_of_center_position=87095198 | |start_of_center_position=87095198 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000298784.5 ENST00000298786. | + | |transcript_name=ENST00000298784.5 ENST00000298786.5 NM_001377161 NM_001377160 NM_001377159 NM_001377158 NM_001377170 NR_165106 NR_165105 NM_001377171 NM_001377169 NM_019054 NM_001377168 NM_001377167 NM_001377172 NM_001377165 NM_001377164 NM_001377163 NM_001377162 NM_001330112 NR_165108 NM_001377166 AK022978 LF384977 MA620554 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106019.1 | |tss_id=hg_106019.1 | ||
Revision as of 18:27, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87095198 |
|---|---|
| End of the center position in the TSS region: | 87095199 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000298784.5 ENST00000298786.5 NM_001377161 NM_001377160 NM_001377159 NM_001377158 NM_001377170 NR_165106 NR_165105 NM_001377171 NM_001377169 NM_019054 NM_001377168 NM_001377167 NM_001377172 NM_001377165 NM_001377164 NM_001377163 NM_001377162 NM_001330112 NR_165108 NM_001377166 AK022978 LF384977 MA620554 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000298784.5:0 ENST00000298786.5:0 NM_001377161:0 NM_001377160:0 NM_001377159:0 NM_001377158:0 NM_001377170:0 NR_165106:0 NR_165105:0 NM_001377171:0 NM_001377169:0 NM_019054:0 NM_001377168:0 NM_001377167:0 NM_001377172:0 NM_001377165:0 NM_001377164:0 NM_001377163:0 NM_001377162:0 NM_001330112:0 NR_165108:0 NM_001377166:0 AK022978:0 LF384977:0 MA620554:0 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001330112 |
| Entrez ID: | 54537 |
| Nearest Unigene: | Hs.500419 |
| Nearest Refseq: | NM_019054 |
| Nearest Ensembl: | ENSG00000122376 |
| Gene Name: | shieldin complex subunit 2 |
| Gene Alias: | FAM35A|FAM35A1|RINN2|bA163M19.1 |
| Gene Description: | shieldin complex subunit 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
