Difference between revisions of "TSS:Hg 106025.1"
From referenceTSS
| Line 2: | Line 2: | ||
|BCYM4= | |BCYM4= | ||
|SK2= | |SK2= | ||
| − | |all_trans=BC009894:0 AK312556:0 AF091242:15 AF150754:15 AF074331:33 AF173365:48 DQ893625:91 DQ895430:91 KR710243:94 KR710244 | + | |all_trans=ENST00000456849.2:0 NM_004670:0 NM_001015880:0 BC009894:0 GQ891452:0 AK312556:0 AF091242:15 AF150754:15 AF074331:33 AF173365:48 DQ893625:91 DQ895430:91 KJ905366:94 KR710243:94 KR710244:94 AF313907:96 ENST00000361175.8:-226 ENST00000465996.5:471 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-16 |
|end=87659886 | |end=87659886 | ||
|end_of_center_position=87659863 | |end_of_center_position=87659863 | ||
|entrez_id=9060 | |entrez_id=9060 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=ATPSK2 | + | |gene_alias=ATPSK2{{!}}BCYM4{{!}}SK2 |
|gene_description=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | |gene_description=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | ||
|gene_id=9060 | |gene_id=9060 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_004670 | |nearest_refseq=NM_004670 | ||
|nearest_unigene=Hs.524491 | |nearest_unigene=Hs.524491 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=87659838 | |start=87659838 | ||
|start_of_center_position=87659862 | |start_of_center_position=87659862 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-14(CTTTTTATACCT,+,0.00) |
| − | |transcript_name=BC009894 AK312556 | + | |transcript_name=ENST00000456849.2 NM_004670 NM_001015880 BC009894 GQ891452 AK312556 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106025.1 | |tss_id=hg_106025.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O95340 Q5TB52 |
}} | }} | ||
Revision as of 18:28, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87659862 |
|---|---|
| End of the center position in the TSS region: | 87659863 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000456849.2 NM_004670 NM_001015880 BC009894 GQ891452 AK312556 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000456849.2:0 NM_004670:0 NM_001015880:0 BC009894:0 GQ891452:0 AK312556:0 AF091242:15 AF150754:15 AF074331:33 AF173365:48 DQ893625:91 DQ895430:91 KJ905366:94 KR710243:94 KR710244:94 AF313907:96 ENST00000361175.8:-226 ENST00000465996.5:471 |
TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NM_001015880 |
| Entrez ID: | 9060 |
| Nearest Unigene: | Hs.524491 |
| Nearest Refseq: | NM_004670 |
| Nearest Ensembl: | ENSG00000198682 |
| Gene Name: | 3'-phosphoadenosine 5'-phosphosulfate synthase 2 |
| Gene Alias: | ATPSK2|BCYM4|SK2 |
| Gene Description: | 3'-phosphoadenosine 5'-phosphosulfate synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -14(CTTTTTATACCT,+,0.00) |
