Difference between revisions of "TSS:Hg 106039.1"
From referenceTSS
| Line 8: | Line 8: | ||
|PTEN1= | |PTEN1= | ||
|TEP1= | |TEP1= | ||
| − | |all_trans=JF268690:20 ENST00000487939 | + | |all_trans=JF268690:20 ENST00000487939.1:48 DQ892604:56 DQ895562:56 EU176713:56 ENST00000462694.1:67 AB528513:68 CR450306:69 KJ534922:69 U93051:69 AK313581:-92 ENST00000618586.1:100 MK783286:-116 KX398936:-339 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=20 | |distance=20 | ||
| − | |distance_to_tss= | + | |distance_to_tss=760 |
|end=87864401 | |end=87864401 | ||
|end_of_center_position=87864386 | |end_of_center_position=87864386 | ||
|entrez_id=5728 | |entrez_id=5728 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=10q23del | + | |gene_alias=10q23del{{!}}BZS{{!}}CWS1{{!}}DEC{{!}}GLM2{{!}}MHAM{{!}}MMAC1{{!}}PTEN1{{!}}PTENbeta{{!}}TEP1 |
|gene_description=phosphatase and tensin homolog | |gene_description=phosphatase and tensin homolog | ||
|gene_id=5728 | |gene_id=5728 | ||
| Line 27: | Line 27: | ||
|hgnc_mgi_id=HGNC:9588 | |hgnc_mgi_id=HGNC:9588 | ||
|nearest_ensembl=ENSG00000171862 | |nearest_ensembl=ENSG00000171862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001304718 |
|nearest_refseq=NM_000314 | |nearest_refseq=NM_000314 | ||
|nearest_unigene=Hs.500466 | |nearest_unigene=Hs.500466 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=87864369 | |start=87864369 | ||
Revision as of 18:28, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87864385 |
|---|---|
| End of the center position in the TSS region: | 87864386 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | JF268690 |
|---|---|
| Distance: | 20 |
| Num_trans: | 14 |
| All_trans: | JF268690:20 ENST00000487939.1:48 DQ892604:56 DQ895562:56 EU176713:56 ENST00000462694.1:67 AB528513:68 CR450306:69 KJ534922:69 U93051:69 AK313581:-92 ENST00000618586.1:100 MK783286:-116 KX398936:-339 |
TATA-Box annotation
| Distance to TSS: | 760 |
|---|---|
| Nearest PromoterID: | NM_001304718 |
| Entrez ID: | 5728 |
| Nearest Unigene: | Hs.500466 |
| Nearest Refseq: | NM_000314 |
| Nearest Ensembl: | ENSG00000171862 |
| Gene Name: | phosphatase and tensin homolog |
| Gene Alias: | 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 |
| Gene Description: | phosphatase and tensin homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
