Difference between revisions of "TSS:Hg 106378.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000539666.5:0 ENST00000478086.5:0 ENST00000624776.3:0 NM_001278525:0 NM_001330732:0 AK095317:0 BC030967:0 ENST00000563195.1:2 LF345592:61 MA581169:61 BC109046:-124 BC109045:-129 NM_001330738:210 NM_001330737:210 NM_001330736:210 NM_001330735:210 NM_001330733:210 ENST00000488700.5:-293 ENST00000316045.9:-313 NM_001278524:-313 NM_001278526:-313 NR_138482:-313 NM_014803:-313 CR627437:-313 LF345593:400 MA581170:400 LF211320:-456 MA446897:-456 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:29009 | |hgnc_mgi_id=HGNC:29009 | ||
|nearest_ensembl=ENSG00000177853 | |nearest_ensembl=ENSG00000177853 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001330732 |
|nearest_refseq=NM_014803 | |nearest_refseq=NM_014803 | ||
|nearest_unigene=Hs.600823 | |nearest_unigene=Hs.600823 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=96130027 | |start=96130027 | ||
|start_of_center_position=96130048 | |start_of_center_position=96130048 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000539666.5 ENST00000478086.5 ENST00000624776.3 NM_001278525 NM_001330732 AK095317 BC030967 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106378.1 | |tss_id=hg_106378.1 | ||
Revision as of 18:36, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 96130048 |
|---|---|
| End of the center position in the TSS region: | 96130049 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000539666.5 ENST00000478086.5 ENST00000624776.3 NM_001278525 NM_001330732 AK095317 BC030967 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000539666.5:0 ENST00000478086.5:0 ENST00000624776.3:0 NM_001278525:0 NM_001330732:0 AK095317:0 BC030967:0 ENST00000563195.1:2 LF345592:61 MA581169:61 BC109046:-124 BC109045:-129 NM_001330738:210 NM_001330737:210 NM_001330736:210 NM_001330735:210 NM_001330733:210 ENST00000488700.5:-293 ENST00000316045.9:-313 NM_001278524:-313 NM_001278526:-313 NR_138482:-313 NM_014803:-313 CR627437:-313 LF345593:400 MA581170:400 LF211320:-456 MA446897:-456 |
TATA-Box annotation
| Distance to TSS: | -7 |
|---|---|
| Nearest PromoterID: | NM_001330732 |
| Entrez ID: | 9849 |
| Nearest Unigene: | Hs.600823 |
| Nearest Refseq: | NM_014803 |
| Nearest Ensembl: | ENSG00000177853 |
| Gene Name: | zinc finger protein 518A |
| Gene Alias: | ZNF518 |
| Gene Description: | zinc finger protein 518A |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
