Difference between revisions of "TSS:Hg 106613.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|PAPRS= | |PAPRS= | ||
| − | |all_trans= | + | |all_trans=ENST00000370296.6:-188 ENST00000428433.5:-188 L25597:-188 M89470:-188 ENST00000554363.2:247 ENST00000361791.7:288 ENST00000427256.6:-317 ENST00000355243.8:-317 NM_000278:-317 NM_003988:-317 NM_003989:-317 NM_003990:-317 NM_003987:-317 AB463994:327 BC141452:327 BC148710:327 LF213819:328 MA449396:328 ENST00000483202.2:332 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 10: | Line 10: | ||
|entrez_id=5076 | |entrez_id=5076 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=FSGS7 | + | |gene_alias=FSGS7{{!}}PAPRS |
|gene_description=paired box 2 | |gene_description=paired box 2 | ||
|gene_id=5076 | |gene_id=5076 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:8616 | |hgnc_mgi_id=HGNC:8616 | ||
|nearest_ensembl=ENSG00000075891 | |nearest_ensembl=ENSG00000075891 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003987 |
|nearest_refseq=NM_000278 | |nearest_refseq=NM_000278 | ||
|nearest_unigene=Hs.155644 | |nearest_unigene=Hs.155644 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
|start=100745898 | |start=100745898 | ||
|start_of_center_position=100745915 | |start_of_center_position=100745915 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000370296.6 ENST00000428433.5 L25597 M89470 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106613.1 | |tss_id=hg_106613.1 | ||
Revision as of 18:41, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 100745915 |
|---|---|
| End of the center position in the TSS region: | 100745916 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000370296.6 ENST00000428433.5 L25597 M89470 |
|---|---|
| Distance: | -188 |
| Num_trans: | 19 |
| All_trans: | ENST00000370296.6:-188 ENST00000428433.5:-188 L25597:-188 M89470:-188 ENST00000554363.2:247 ENST00000361791.7:288 ENST00000427256.6:-317 ENST00000355243.8:-317 NM_000278:-317 NM_003988:-317 NM_003989:-317 NM_003990:-317 NM_003987:-317 AB463994:327 BC141452:327 BC148710:327 LF213819:328 MA449396:328 ENST00000483202.2:332 |
TATA-Box annotation
| Distance to TSS: | 204 |
|---|---|
| Nearest PromoterID: | NM_003987 |
| Entrez ID: | 5076 |
| Nearest Unigene: | Hs.155644 |
| Nearest Refseq: | NM_000278 |
| Nearest Ensembl: | ENSG00000075891 |
| Gene Name: | paired box 2 |
| Gene Alias: | FSGS7|PAPRS |
| Gene Description: | paired box 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
