Difference between revisions of "TSS:Hg 106619.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|FAM178A= | |FAM178A= | ||
| − | |all_trans=ENST00000370271.7:0 | + | |all_trans=ENST00000370271.7:0 ENST00000649226.1:0 ENST00000238961.9:0 NM_001136123:0 NM_001243770:0 NM_018121:0 AL833126:0 AL832343:0 BC015131:0 BC047715:0 ENST00000370269.3:2 BC030565:2 BC064526:2 AK292565:-4 BC020915:10 ENST00000609386.1:19 BC073832:19 AL832383:24 AB385255:133 BC160007:133 AF460992:-387 AF460991:-387 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=100912977 | |end=100912977 | ||
|end_of_center_position=100912967 | |end_of_center_position=100912967 | ||
|entrez_id=55719 | |entrez_id=55719 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=C10orf6 | + | |gene_alias=C10orf6{{!}}FAM178A |
|gene_description=SMC5-SMC6 complex localization factor 2 | |gene_description=SMC5-SMC6 complex localization factor 2 | ||
|gene_id=55719 | |gene_id=55719 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_018121 | |nearest_refseq=NM_018121 | ||
|nearest_unigene=Hs.447458 | |nearest_unigene=Hs.447458 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=100912955 | |start=100912955 | ||
|start_of_center_position=100912966 | |start_of_center_position=100912966 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000370271.7 | + | |transcript_name=ENST00000370271.7 ENST00000649226.1 ENST00000238961.9 NM_001136123 NM_001243770 NM_018121 AL833126 AL832343 BC015131 BC047715 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106619.1 | |tss_id=hg_106619.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B1AL16 Q05BG6 | + | |uniprot_id=A0A3B3IRS8 B1AL16 Q05BG6 Q8IX21 |
}} | }} | ||
Revision as of 18:41, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 100912966 |
|---|---|
| End of the center position in the TSS region: | 100912967 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000370271.7 ENST00000649226.1 ENST00000238961.9 NM_001136123 NM_001243770 NM_018121 AL833126 AL832343 BC015131 BC047715 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000370271.7:0 ENST00000649226.1:0 ENST00000238961.9:0 NM_001136123:0 NM_001243770:0 NM_018121:0 AL833126:0 AL832343:0 BC015131:0 BC047715:0 ENST00000370269.3:2 BC030565:2 BC064526:2 AK292565:-4 BC020915:10 ENST00000609386.1:19 BC073832:19 AL832383:24 AB385255:133 BC160007:133 AF460992:-387 AF460991:-387 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_001243770 |
| Entrez ID: | 55719 |
| Nearest Unigene: | Hs.447458 |
| Nearest Refseq: | NM_018121 |
| Nearest Ensembl: | ENSG00000119906 |
| Gene Name: | SMC5-SMC6 complex localization factor 2 |
| Gene Alias: | C10orf6|FAM178A |
| Gene Description: | SMC5-SMC6 complex localization factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
